Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14p15
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.2  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   1.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   2.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   2.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   2.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   3.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   3.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   3.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   3.8  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   5.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    20   6.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   6.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   6.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   8.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   8.8  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 261 TRNTLYFNTIYSNY*NHQKYYS 196
           +  T++ N  Y+NY N + YY+
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYN 329


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 273 SYNSTRNTLYFNTIYSNY*NHQKYYSTWNFSST 175
           +Y+S  NTL +  + SN   + K+ +  N SST
Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 112 LVPVLLNNVINKCPAIMLAVNRT 180
           L+P +LNN  N+C +  + +  T
Sbjct: 56  LLPEVLNNHCNRCTSRQIGIANT 78


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 291 YKSHIYSYNSTRNTLYFNTIYSNY*NHQK--YYSTWN 187
           + ++ Y YN   N    N   +NY N+ K  YY+  N
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 300 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 199
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 300 N*KYKSHIYSYNSTRNTLYFNTIYSNY*NHQKYY 199
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 273 SYNSTRNTLYFNTIYSNY 220
           S+  T N  YF+  Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 300 N*KYKSHIYSYNSTRNTLYFNTIY 229
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 300 N*KYKSHIYSYNSTRNTLYFNTIY 229
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 300 N*KYKSHIYSYNSTRNTLYFNTIY 229
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 300 N*KYKSHIYSYNSTRNTLYFNTIY 229
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYST 193
           ++L  N  YSNY N+   Y+T
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNT 103


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 276 YSYNSTRNTLYFNTIY 229
           Y+YN+    LY+N  Y
Sbjct: 98  YNYNNNCKKLYYNINY 113


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 184 KVPGRIIFLMVSIIT 228
           KV  R+  LM+S+IT
Sbjct: 635 KVADRVSMLMISVIT 649


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 291 YKSHIYSYNSTRNTLYFNTIY 229
           Y ++  +YN+    LY+N  Y
Sbjct: 94  YNNYNNNYNNYNKKLYYNINY 114


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 255 NTLYFNTIYSNY*NHQKYYSTWN 187
           ++L  NTI++N  N + YY+  N
Sbjct: 316 SSLSNNTIHNNNYNKKLYYNIIN 338


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 291 YKSHIYSYNSTRNTLYFNTIY 229
           Y ++  +YN+    LY+N  Y
Sbjct: 337 YNNYNNNYNNNYKKLYYNINY 357


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 216 FNNYYKWY 239
           +NNYY W+
Sbjct: 142 YNNYYIWH 149


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 299 IKNTNHIFIHIIPQG 255
           IKN +H+  + +P+G
Sbjct: 517 IKNVSHVINYDLPKG 531


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 216 FNNYYKWY 239
           +NNYY W+
Sbjct: 142 YNNYYIWH 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,788
Number of Sequences: 438
Number of extensions: 1071
Number of successful extensions: 26
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)