Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14p10
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    33   0.033
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    31   0.18 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.95 
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   5.0  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    26   5.0  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    26   6.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   8.8  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   8.8  
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...    25   8.8  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 31  SISPKTTXEGPDDGHDVRQHGVPADLLQRRQVREARR-LDLA-SVRLGASVGDEVDPELP 204
           +IS  +T +  +DG    QH   ++ L+R++VR  RR  DL+   +LG+S G      LP
Sbjct: 41  NISRASTGQLAEDGDTSSQHEDSSEELKRQEVRGMRRHSDLSIDAKLGSSEGSTASSALP 100

Query: 205 L 207
           L
Sbjct: 101 L 101


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 379 LLDDAEGLAHLLDATQVPIVAVAVRPYGHV 468
           LL   +G  HL    QVPI+ +A++ YGH+
Sbjct: 192 LLPLKKGAFHLAVQAQVPIIPIAIQTYGHL 221


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -1

Query: 406 APVPPHH-RAVPQRHAPRGGQDRRRQAHPA----LPGGDEDVHGGADPPLQAVHAGLPGA 242
           AP+PP H  AVP   A     D + + HP+          D  G +  P  A  AG P  
Sbjct: 266 APIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTRPSSADTAGSPAT 325

Query: 241 A 239
           +
Sbjct: 326 S 326


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 49  TXEGPDDGHDVRQHGVPADLLQRRQVREARRLDLASVRLGASVGD 183
           T +  D+ + V+QH   + LL R    ++  L   S++ GAS+ D
Sbjct: 161 TFDNADELYKVKQHHPNSRLLLRISTDDSNSLCRLSLKFGASLDD 205


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 257 CVNSLKWWISASMDVFISSREGGV 328
           C+N +   I+AS +VF   R+GG+
Sbjct: 348 CLNCISLLIAASREVFAFCRDGGI 371


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 681 EFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVV 583
           E+ +K+  R  E  DVL  NR+  Q  KD+G++
Sbjct: 228 EYINKYRGRYSEGPDVLRKNRL--QAQKDLGLI 258


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 61  PDDGHDVRQHGVPADLLQRRQVREARRLDLASVRLGASVGDEVDPELPLG-SLHGGVGGA 237
           PD+  DV    V    +Q+++VREA  L L    L   +G  +DP  P G  L+G  G  
Sbjct: 125 PDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIG--IDP--PRGVLLYGPPGTG 180

Query: 238 RRHLV 252
           +  LV
Sbjct: 181 KTMLV 185


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 412 GDAPVPPHHRAVPQRHAPRGGQDRRRQAHP 323
           G  P+PP  R+ P    PR      RQ  P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 669 KFAERIDEVEDVLTTNR-IWVQRTKDIG 589
           K A  I +V++    NR  WVQ   DIG
Sbjct: 753 KDASEIQDVKEAFAVNRRFWVQTLSDIG 780


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -1

Query: 331 AHPALPGGDEDVHGGADPPLQAVHAGLPGAAGLHLHRRGGSQGGVRDLPRLRRRLQAVQM 152
           A P LP    DV+    P LQA+ A           R  G  G  R LP L+ R  ++Q 
Sbjct: 16  ARPDLPRNSPDVYDTKIPILQAITA-------KKCQRFRGDWGAKRKLPILKNRHISIQK 68

Query: 151 QD 146
            D
Sbjct: 69  FD 70


>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 186 LVSDGGSKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAI 67
           L+   G +PYRC        +L AL K+ R +   D+V +
Sbjct: 51  LIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTL 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,838
Number of Sequences: 5004
Number of extensions: 52125
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)