Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14p04
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    30   0.36 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   1.9  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   5.9  

>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 338 LHARTLRTPRYLMSWHSLINHNSLQLI 418
           LH  +L T RY MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 125 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPYESVK 244
           +N+K    S L++  I+   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 640 KSGTIF-DDFLITDDPAAAKERGEVIKKRQEG 548
           KS T+F D+  IT  PA+ K+R    KK+  G
Sbjct: 20  KSETVFLDEAAITKPPASKKKRKNRKKKKNNG 51


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 378 DIKYLGVRSVRAWRILFLKPLVAQSSTIP 292
           D+K  GV   RA R+L L  +V   +T+P
Sbjct: 347 DVKSKGVDGARAERVLELINIVTNKNTVP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,719
Number of Sequences: 5004
Number of extensions: 43955
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)