Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14p04
(688 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M84739-1|AAA51916.1| 417|Homo sapiens calreticulin protein. 55 2e-07
M32294-1|AAA36582.1| 417|Homo sapiens protein ( Human Ro ribonu... 55 2e-07
CR457070-1|CAG33351.1| 417|Homo sapiens CALR protein. 55 2e-07
BT007448-1|AAP36116.1| 417|Homo sapiens calreticulin protein. 55 2e-07
BC020493-1|AAH20493.1| 417|Homo sapiens calreticulin protein. 55 2e-07
BC007911-1|AAH07911.1| 417|Homo sapiens calreticulin protein. 55 2e-07
BC002500-1|AAH02500.1| 417|Homo sapiens calreticulin protein. 55 2e-07
AY047586-1|AAL13126.1| 417|Homo sapiens calreticulin protein. 55 2e-07
AK223060-1|BAD96780.1| 406|Homo sapiens calreticulin precursor ... 55 2e-07
AD000092-6|AAB51176.1| 417|Homo sapiens calreticulin protein. 55 2e-07
BC014595-1|AAH14595.1| 384|Homo sapiens calreticulin 3 protein. 51 4e-06
AK058084-1|BAB71655.1| 384|Homo sapiens protein ( Homo sapiens ... 51 4e-06
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 35 0.31
M94859-1|AAA21749.1| 592|Homo sapiens calnexin protein. 30 6.7
L18887-1|AAA21013.1| 592|Homo sapiens calnexin protein. 30 6.7
L10284-1|AAA36125.1| 592|Homo sapiens calnexin protein. 30 6.7
BC042843-1|AAH42843.1| 592|Homo sapiens calnexin protein. 30 6.7
BC003552-1|AAH03552.1| 592|Homo sapiens calnexin protein. 30 6.7
AJ271880-1|CAB72137.1| 592|Homo sapiens calnexin protein. 30 6.7
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 30 8.9
>M84739-1|AAA51916.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>M32294-1|AAA36582.1| 417|Homo sapiens protein ( Human Ro
ribonucleoprotein autoantigen (Ro/SS-A), complete cds.
).
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>CR457070-1|CAG33351.1| 417|Homo sapiens CALR protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BT007448-1|AAP36116.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC020493-1|AAH20493.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC007911-1|AAH07911.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC002500-1|AAH02500.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>AY047586-1|AAL13126.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>AK223060-1|BAD96780.1| 406|Homo sapiens calreticulin precursor
variant protein.
Length = 406
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 295 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 346
>AD000092-6|AAB51176.1| 417|Homo sapiens calreticulin protein.
Length = 417
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 536
Y D +GLDLWQVKSGTIFD+FLIT+D A A+E G E + EK+M
Sbjct: 306 YAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQM 357
>BC014595-1|AAH14595.1| 384|Homo sapiens calreticulin 3 protein.
Length = 384
Score = 50.8 bits (116), Expect = 4e-06
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -1
Query: 679 DEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 539
+ I A+GL+LWQV+SGTIFD+FLITDD A G+ +G ++
Sbjct: 295 ENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPER 341
>AK058084-1|BAB71655.1| 384|Homo sapiens protein ( Homo sapiens
cDNA FLJ25355 fis, clone TST01593. ).
Length = 384
Score = 50.8 bits (116), Expect = 4e-06
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -1
Query: 679 DEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 539
+ I A+GL+LWQV+SGTIFD+FLITDD A G+ +G ++
Sbjct: 295 ENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPER 341
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +1
Query: 16 LYNNNHNHTKH*GYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHLHGH 183
L+ + H HT + I Y + H H + H ++T + H H H
Sbjct: 56 LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115
Query: 184 QYETTDTYLLTHNMSLRIGKIRAKHTHS 267
+ + T L TH +SL HTH+
Sbjct: 116 THTLSCTSLYTHTLSLHWLTCLYTHTHA 143
>M94859-1|AAA21749.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 30.3 bits (65), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDD 599
++ A+GL+LW + S FD+F+I D
Sbjct: 414 FRMTPFSAIGLELWSMTSDIFFDNFIICAD 443
>L18887-1|AAA21013.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 30.3 bits (65), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDD 599
++ A+GL+LW + S FD+F+I D
Sbjct: 414 FRMTPFSAIGLELWSMTSDIFFDNFIICAD 443
>L10284-1|AAA36125.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 30.3 bits (65), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDD 599
++ A+GL+LW + S FD+F+I D
Sbjct: 414 FRMTPFSAIGLELWSMTSDIFFDNFIICAD 443
>BC042843-1|AAH42843.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 30.3 bits (65), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDD 599
++ A+GL+LW + S FD+F+I D
Sbjct: 414 FRMTPFSAIGLELWSMTSDIFFDNFIICAD 443
>BC003552-1|AAH03552.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 30.3 bits (65), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDD 599
++ A+GL+LW + S FD+F+I D
Sbjct: 414 FRMTPFSAIGLELWSMTSDIFFDNFIICAD 443
>AJ271880-1|CAB72137.1| 592|Homo sapiens calnexin protein.
Length = 592
Score = 30.3 bits (65), Expect = 6.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 688 YKRDEICAVGLDLWQVKSGTIFDDFLITDD 599
++ A+GL+LW + S FD+F+I D
Sbjct: 414 FRMTPFSAIGLELWSMTSDIFFDNFIICAD 443
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 29.9 bits (64), Expect = 8.9
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 31 HNHTKH*GYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYETTDTYL 210
H H H Y + + Y H H + H +IN+ + H+H H + T T+
Sbjct: 254 HIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTHT 309
Query: 211 LTH 219
TH
Sbjct: 310 YTH 312
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,643,629
Number of Sequences: 237096
Number of extensions: 1487953
Number of successful extensions: 2805
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2800
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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