Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o21
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       26   0.29 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 57  LLASIVF*KQILCTL*VTFL*HVQTSPSVSILYNCIELN 173
           ++ S  +   ++C+L  T + H++T P+V+    C+  N
Sbjct: 155 IMLSFAWIGSVVCSLPQTIVFHLETHPNVTWYSQCVTFN 193


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 423 LMKSKLGNDWKNFEPYTNILWLHY 352
           ++  K+GN  +  +PY +  W +Y
Sbjct: 96  VISEKIGNGGRLLQPYPDWSWANY 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 654  ETFSSRPPNQKFATFVLRGRRHCTPRCGVAATIIDYSLSRVSLP 523
            ET +    NQ   TFV   +     + G+A+T+  Y+  +V LP
Sbjct: 1573 ETHNVAGSNQAEFTFVTLTKEGELSKRGIASTVPFYADVKVMLP 1616


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 654  ETFSSRPPNQKFATFVLRGRRHCTPRCGVAATIIDYSLSRVSLP 523
            ET +    NQ   TFV   +     + G+A+T+  Y+  +V LP
Sbjct: 1569 ETHNVAGSNQAEFTFVTLTKEGELSKRGIASTVPFYADVKVMLP 1612


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 423 LMKSKLGNDWKNFEPYTNILW 361
           ++ +K+GN     EPY N  W
Sbjct: 93  VISNKIGNGGPLLEPYPNWSW 113


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +3

Query: 315 FCSVGPLSFYQQCNVATVCLYMVQSSSNHCPTCFS*G 425
           +C +G        +   VC+ M +    H P C S G
Sbjct: 86  YCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNG 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,690
Number of Sequences: 438
Number of extensions: 3211
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)