Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o19
         (378 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ304976-11|ABB98592.1|  603|Homo sapiens NADH dehydrogenase sub...    28   8.8  
DQ304974-11|ABB98566.1|  603|Homo sapiens NADH dehydrogenase sub...    28   8.8  

>DQ304976-11|ABB98592.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
 Frame = -2

Query: 377 SYPYIIYLPFNLKLMVIYVSILGSILGFMVRNMGIYSLNKLLLRYNLRSFLC--LI*FIP 204
           ++P+   +P  LKL  + V+ LG +    +     Y  NKL ++  L +F    ++ F P
Sbjct: 475 AFPFQTTIPLYLKLTALAVTFLGLLTALDLN----YLTNKLKMKSPLCTFYFSNMLGFYP 530

Query: 203 NLSTYGLNYI-YLNFRQILFKNIDIGWREIYRGKGIFNILKNYSVFYNIYQINNFKIYLF 27
           +++   + Y+  L  + +    +D+ W E    K I     + S+  +  Q    K+Y  
Sbjct: 531 SITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITST-QKGMIKLYFL 589

Query: 26  RFILWFII 3
            F    I+
Sbjct: 590 SFFFPLIL 597


>DQ304974-11|ABB98566.1|  603|Homo sapiens NADH dehydrogenase
           subunit 5 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
 Frame = -2

Query: 377 SYPYIIYLPFNLKLMVIYVSILGSILGFMVRNMGIYSLNKLLLRYNLRSFLC--LI*FIP 204
           ++P+   +P  LKL  + V+ LG +    +     Y  NKL ++  L +F    ++ F P
Sbjct: 475 AFPFQTTIPLYLKLTALAVTFLGLLTALDLN----YLTNKLKMKSPLCTFYFSNMLGFYP 530

Query: 203 NLSTYGLNYI-YLNFRQILFKNIDIGWREIYRGKGIFNILKNYSVFYNIYQINNFKIYLF 27
           +++   + Y+  L  + +    +D+ W E    K I     + S+  +  Q    K+Y  
Sbjct: 531 SITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSIITST-QKGMIKLYFL 589

Query: 26  RFILWFII 3
            F    I+
Sbjct: 590 SFFFPLIL 597


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,599,381
Number of Sequences: 237096
Number of extensions: 370198
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)