Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o19
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = -2

Query: 287 RNMGIYSLNKLLLRYNLRSFLCLI*FIPNLSTYGLNYIYLNFRQILFKNIDIGWREIYRG 108
           R+  + S   + L   L +   +  ++   ST  +    LNF   LF  +D+ WR  + G
Sbjct: 241 RHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFCLLDVQWRIPFNG 300

Query: 107 KGIFNILKNY 78
             + N++  Y
Sbjct: 301 IQMPNLMVFY 310


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 101 IFNILKNYSVFYNIYQINNFKIYLFRFI 18
           +F  + N++ FY+   INN  +   RF+
Sbjct: 790 LFASMPNFADFYSEESINNQGLECLRFL 817


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 83  NYSVFYNIYQINNFKIY 33
           NY+  YN Y  NN+  Y
Sbjct: 333 NYNNNYNNYNNNNYNNY 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,002
Number of Sequences: 438
Number of extensions: 1137
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)