Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o13
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    27   0.24 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    27   0.24 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    27   0.24 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.0  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 510 KIINHNSPNY*NNTTVSKFLYCDKYL*IILQLGVLKIITMIIP 382
           KII+  S NY  N    K LYC+ Y  +   +  ++ I + +P
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVP 122


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 510 KIINHNSPNY*NNTTVSKFLYCDKYL*IILQLGVLKIITMIIP 382
           KII+  S NY  N    K LYC+ Y  +   +  ++ I + +P
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVP 122


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 510 KIINHNSPNY*NNTTVSKFLYCDKYL*IILQLGVLKIITMIIP 382
           KII+  S NY  N    K LYC+ Y  +   +  ++ I + +P
Sbjct: 80  KIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVP 122


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 209 LQTS*NYASYTFYFANY-HFSKRSYY 283
           L  + NY++Y  Y  NY +++K+ YY
Sbjct: 85  LSNNYNYSNYNNYNNNYNNYNKKLYY 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 224 NYASYTFYFANYHFSKRSYYYGCTSI 301
           NY +Y  Y  NY+ + +  YY    I
Sbjct: 333 NYNNYNNYNNNYNNNYKKLYYNINYI 358


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 224 NYASYTFYFANYHFSKRSYY 283
           NY +Y +   NY+  K+ YY
Sbjct: 100 NYNNYNYNNNNYNNYKKLYY 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,417
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)