Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o08
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   1.7  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   3.0  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    25   6.9  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    25   6.9  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 603  NFKAGNIEDQNE-LTRTNKASMKRKVLNY*DSHSNV 499
            +FK  + +DQ E +T+TN AS KR V  Y DS +NV
Sbjct: 1256 SFKTESTDDQLEKVTQTNVASNKR-VAPYADSMANV 1290


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 497 LKNNWHSCNIHVTMCFF 447
           L  N+ SCN H+T+C F
Sbjct: 69  LNPNFESCNPHITLCTF 85


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 189 ISGSRTVRGHDENDINVKIMLYKAICNIYILCSRSELVR 73
           ISG  TVR  +E + N+ I L  A   IY  CS  E  R
Sbjct: 43  ISGVHTVRFKNELERNITIKLGYANAKIY-KCSNEECPR 80


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 343 QVLHSCNRLVARVKLSSYMTFRPYGTLQLRINNN 444
           + LH C RL++    S+  TF PY      +N N
Sbjct: 7   KTLHVCLRLISLRNCSNTWTFVPYANSNRGLNIN 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,933
Number of Sequences: 5004
Number of extensions: 42610
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)