Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o08
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058359-1|AAL13588.1|  555|Drosophila melanogaster GH12970p pro...    29   5.3  
AE014296-2818|AAF49399.1|  555|Drosophila melanogaster CG9951-PA...    29   5.3  
AY051506-1|AAK92930.1|  668|Drosophila melanogaster GH15686p pro...    28   9.2  
AE014296-2208|AAF49871.2|  668|Drosophila melanogaster CG11010-P...    28   9.2  

>AY058359-1|AAL13588.1|  555|Drosophila melanogaster GH12970p
           protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = +1

Query: 271 FRYT--FVFET*KHHIIYLNASQ*YRQVLHSCNRLVARVKLSSYMTFRPYGTLQLRINNN 444
           F YT   +F++ KH +    A +   Q+  +CN LV  V L+  +T +    L+++I+  
Sbjct: 457 FNYTDDLLFQSAKHDLHAKRAYKLLAQLHANCNELVECVSLTGNVT-KQIRELEVQIDGE 515

Query: 445 *KKHIVT*ILQL---CQLFLSHI 504
             K+++T + Q+    Q F  HI
Sbjct: 516 KLKNVLTSLQQITGDIQKFEQHI 538


>AE014296-2818|AAF49399.1|  555|Drosophila melanogaster CG9951-PA
           protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = +1

Query: 271 FRYT--FVFET*KHHIIYLNASQ*YRQVLHSCNRLVARVKLSSYMTFRPYGTLQLRINNN 444
           F YT   +F++ KH +    A +   Q+  +CN LV  V L+  +T +    L+++I+  
Sbjct: 457 FNYTDDLLFQSAKHDLHAKRAYKLLAQLHANCNELVECVSLTGNVT-KQIRELEVQIDGE 515

Query: 445 *KKHIVT*ILQL---CQLFLSHI 504
             K+++T + Q+    Q F  HI
Sbjct: 516 KLKNVLTSLQQITGDIQKFEQHI 538


>AY051506-1|AAK92930.1|  668|Drosophila melanogaster GH15686p
           protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 44  NVAVHNFI*NLTNSLRLHSIYILHIALYNMIFTLISFSSCPRTVREPE 187
           N  V   I  LT++L +   Y+LH+A  N  F      +C + V  P+
Sbjct: 211 NDRVSTVIFFLTSTLYILFSYLLHVATINSPFVRFHVEACSKIVLRPD 258


>AE014296-2208|AAF49871.2|  668|Drosophila melanogaster CG11010-PA
           protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 44  NVAVHNFI*NLTNSLRLHSIYILHIALYNMIFTLISFSSCPRTVREPE 187
           N  V   I  LT++L +   Y+LH+A  N  F      +C + V  P+
Sbjct: 211 NDRVSTVIFFLTSTLYILFSYLLHVATINSPFVRFHVEACSKIVLRPD 258


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,036,848
Number of Sequences: 53049
Number of extensions: 418344
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)