Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o08
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  LRLHSIYILHIALYNMIFTLISFSSCPRTV 175
           +R ++IYIL+ AL++    +ISF SC + +
Sbjct: 54  MRSYAIYILNFALFDFATCIISFFSCQQVI 83


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 508 FKCDLKIIGIAAIFMLQCVFFNYYL 434
           F+C++ ++ IAAIF  + +F NY L
Sbjct: 321 FQCEIALLYIAAIFHPRSIFPNYLL 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,722
Number of Sequences: 27780
Number of extensions: 239425
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)