Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14o02
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   108   6e-25
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.3  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   9.3  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  108 bits (260), Expect = 6e-25
 Identities = 69/211 (32%), Positives = 92/211 (43%)
 Frame = -2

Query: 643 PYXGTILVN*IXGGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNR 464
           P+ G  LV+ + GGF+V N TL RF++                    H  GS+NPLG+  
Sbjct: 155 PFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTA 214

Query: 463 NLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVHIQPE*Y 284
           N+D+IP +P++  KD                 NPY   +PD   PA+PL TP+ I PE Y
Sbjct: 215 NMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPADPLKTPMSIVPEWY 274

Query: 283 FLFAYAILRSIPNKLGGVXXXXXXXXXXXXLPFTFKKKIQGIQFYPINQXXXXXXXXXXX 104
            L  YAILR+IPN   GV            LP      I+G  F P  +           
Sbjct: 275 LLPFYAILRAIPNFQLGVIAMLLSILVLLLLPLLDFSAIRGNSFNPFGKFFFWTFVADFV 334

Query: 103 XXXXIGARPVENPYIITGQLLTNYIFFIFFL 11
               IG    EN +I  G + T + F  FF+
Sbjct: 335 ILAWIGGSHPENVFITIGAIATIFYFSYFFI 365


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 122 ILSNYNFINMNRSPTCRKSIYYYRT 48
           ++S YNF  M RS     S+YY RT
Sbjct: 731 VISAYNFSTMIRSSMQFVSLYYIRT 755


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 134 YFLNILSNYNFINMNRSPTCRKSIYYYRTIINQ 36
           + L I+ +  FIN      CR  +Y+Y T+ NQ
Sbjct: 26  FALVIILSVIFINFFFFYLCRCCVYFYHTLENQ 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,486
Number of Sequences: 5004
Number of extensions: 25008
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)