Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14n19
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   1.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   1.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   1.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.1  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +1

Query: 154 ISNNCSKYLNRKRGLFKNMIKYLI 225
           ++ +C K  +++R + K +IK+L+
Sbjct: 72  LATDCKKCTDKQREVIKKVIKFLV 95


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +1

Query: 154 ISNNCSKYLNRKRGLFKNMIKYLI 225
           ++ +C K  +++R + K +IK+L+
Sbjct: 72  LATDCKKCTDKQREVIKKVIKFLV 95


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +1

Query: 154 ISNNCSKYLNRKRGLFKNMIKYLI 225
           ++ +C K  +++R + K +IK+L+
Sbjct: 72  LATDCKKCTDKQREVIKKVIKFLV 95


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 124 LFYYLKRD*LISNNCSKYLNRKRGLFKNMIKY 219
           LFYY+ +  +   NC +  NR  G  K  I +
Sbjct: 233 LFYYMHQQIMARYNCERLCNR-LGRVKRFINW 263


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 172 KYLNRKRGLFK 204
           K+ NR+RG+FK
Sbjct: 479 KWTNRERGVFK 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,299
Number of Sequences: 438
Number of extensions: 2067
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)