Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14n17
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018453-1|AAH18453.1| 249|Homo sapiens MIT, microtubule intera... 52 2e-06
AC092587-3|AAX88928.1| 249|Homo sapiens unknown protein. 52 2e-06
BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sortin... 50 7e-06
AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing... 50 7e-06
AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sortin... 50 7e-06
AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein. 50 7e-06
BC009692-1|AAH09692.1| 81|Homo sapiens VPS4B protein protein. 50 9e-06
BC004540-1|AAH04540.1| 541|Homo sapiens RPS6KL1 protein protein. 43 0.001
AC006530-3|AAD30182.1| 549|Homo sapiens unknown protein. 43 0.001
BT006631-1|AAP35277.1| 342|Homo sapiens sorting nexin 15 protein. 41 0.004
BC014520-1|AAH14520.1| 342|Homo sapiens sorting nexin 15 protein. 41 0.004
BC012767-1|AAH12767.1| 342|Homo sapiens sorting nexin 15 protein. 41 0.004
BC009897-1|AAH09897.1| 342|Homo sapiens sorting nexin 15 protein. 41 0.004
AF175267-1|AAF89955.1| 342|Homo sapiens sorting nexin 15 protein. 41 0.004
AK054800-1|BAB70808.1| 255|Homo sapiens protein ( Homo sapiens ... 40 0.007
BC056202-1|AAH56202.1| 813|Homo sapiens calpain 7 protein. 33 1.1
AB028639-1|BAA78730.1| 813|Homo sapiens PalBH protein. 33 1.1
AF147791-1|AAD55679.1| 957|Homo sapiens mucin 11 protein. 32 1.9
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 5.8
BC133027-1|AAI33028.1| 126|Homo sapiens C9orf117 protein protein. 30 7.7
>BC018453-1|AAH18453.1| 249|Homo sapiens MIT, microtubule
interacting and transport, domain containing 1 protein.
Length = 249
Score = 52.0 bits (119), Expect = 2e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = -2
Query: 563 AVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVRRGALTAKLTRYMERAEE 384
A +++KRAVELD R +A Y++ + L+ V+ D +R L K+++YM+RAE
Sbjct: 15 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74
Query: 383 LKSML 369
+K L
Sbjct: 75 IKKYL 79
>AC092587-3|AAX88928.1| 249|Homo sapiens unknown protein.
Length = 249
Score = 52.0 bits (119), Expect = 2e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = -2
Query: 563 AVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVRRGALTAKLTRYMERAEE 384
A +++KRAVELD R +A Y++ + L+ V+ D +R L K+++YM+RAE
Sbjct: 15 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 74
Query: 383 LKSML 369
+K L
Sbjct: 75 IKKYL 79
>BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sorting 4
homolog B (S. cerevisiae) protein.
Length = 444
Score = 50.4 bits (115), Expect = 7e-06
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 575 NYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVR-RGALTAKLTRYM 399
N ++A+ L +A + D AG +EA + Y+ ++++ + VV E + + ++ AK T Y+
Sbjct: 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 66
Query: 398 ERAEELKSMLRGDSR 354
+RAE+LK L+ +
Sbjct: 67 DRAEKLKEYLKNKEK 81
>AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing 1
protein.
Length = 444
Score = 50.4 bits (115), Expect = 7e-06
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 575 NYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVR-RGALTAKLTRYM 399
N ++A+ L +A + D AG +EA + Y+ ++++ + VV E + + ++ AK T Y+
Sbjct: 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 66
Query: 398 ERAEELKSMLRGDSR 354
+RAE+LK L+ +
Sbjct: 67 DRAEKLKEYLKNKEK 81
>AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sorting
factor 4B protein.
Length = 444
Score = 50.4 bits (115), Expect = 7e-06
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 575 NYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVR-RGALTAKLTRYM 399
N ++A+ L +A + D AG +EA + Y+ ++++ + VV E + + ++ AK T Y+
Sbjct: 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 66
Query: 398 ERAEELKSMLRGDSR 354
+RAE+LK L+ +
Sbjct: 67 DRAEKLKEYLKNKEK 81
>AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein.
Length = 444
Score = 50.4 bits (115), Expect = 7e-06
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 575 NYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVR-RGALTAKLTRYM 399
N ++A+ L +A + D AG +EA + Y+ ++++ + VV E + + ++ AK T Y+
Sbjct: 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 66
Query: 398 ERAEELKSMLRGDSR 354
+RAE+LK L+ +
Sbjct: 67 DRAEKLKEYLKNKEK 81
>BC009692-1|AAH09692.1| 81|Homo sapiens VPS4B protein protein.
Length = 81
Score = 50.0 bits (114), Expect = 9e-06
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -2
Query: 575 NYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVR-RGALTAKLTRYM 399
N ++A+ L +A + D AG +EA + Y+ ++++ + VV E + + ++ AK T Y+
Sbjct: 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL 66
Query: 398 ERAEELKSMLR 366
+RAE+LK L+
Sbjct: 67 DRAEKLKEYLK 77
>BC004540-1|AAH04540.1| 541|Homo sapiens RPS6KL1 protein protein.
Length = 541
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/83 (27%), Positives = 45/83 (54%)
Frame = -2
Query: 629 EEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSE 450
E+ + L + M ++ A + I+ A+E D + + AF Y++ + L+ +H +
Sbjct: 31 EQIRNRVALGVPDMTKRDYLVDAATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVD 90
Query: 449 TDAVRRGALTAKLTRYMERAEEL 381
+ RR A+ K+T+Y+ RAEE+
Sbjct: 91 PNKERREAVKLKITKYLRRAEEI 113
>AC006530-3|AAD30182.1| 549|Homo sapiens unknown protein.
Length = 549
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/83 (27%), Positives = 45/83 (54%)
Frame = -2
Query: 629 EEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSE 450
E+ + L + M ++ A + I+ A+E D + + AF Y++ + L+ +H +
Sbjct: 31 EQIRNRVALGVPDMTKRDYLVDAATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVD 90
Query: 449 TDAVRRGALTAKLTRYMERAEEL 381
+ RR A+ K+T+Y+ RAEE+
Sbjct: 91 PNKERREAVKLKITKYLRRAEEI 113
>BT006631-1|AAP35277.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -2
Query: 644 DRISYEEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVP 465
D+ +E E D E P +A LI +A+ + AG A + YRD + L+
Sbjct: 245 DQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVHVLLQ 304
Query: 464 VVHSETDAVRRGALTAKLTRYMERAEEL 381
V S+ R+ + K Y++RAEE+
Sbjct: 305 GVPSDPLPARQEGVKKKAAEYLKRAEEI 332
>BC014520-1|AAH14520.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -2
Query: 644 DRISYEEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVP 465
D+ +E E D E P +A LI +A+ + AG A + YRD + L+
Sbjct: 245 DQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVHVLLQ 304
Query: 464 VVHSETDAVRRGALTAKLTRYMERAEEL 381
V S+ R+ + K Y++RAEE+
Sbjct: 305 GVPSDPLPARQEGVKKKAAEYLKRAEEI 332
>BC012767-1|AAH12767.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -2
Query: 644 DRISYEEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVP 465
D+ +E E D E P +A LI +A+ + AG A + YRD + L+
Sbjct: 245 DQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVHVLLQ 304
Query: 464 VVHSETDAVRRGALTAKLTRYMERAEEL 381
V S+ R+ + K Y++RAEE+
Sbjct: 305 GVPSDPLPARQEGVKKKAAEYLKRAEEI 332
>BC009897-1|AAH09897.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -2
Query: 644 DRISYEEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVP 465
D+ +E E D E P +A LI +A+ + AG A + YRD + L+
Sbjct: 245 DQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVHVLLQ 304
Query: 464 VVHSETDAVRRGALTAKLTRYMERAEEL 381
V S+ R+ + K Y++RAEE+
Sbjct: 305 GVPSDPLPARQEGVKKKAAEYLKRAEEI 332
>AF175267-1|AAF89955.1| 342|Homo sapiens sorting nexin 15 protein.
Length = 342
Score = 41.1 bits (92), Expect = 0.004
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -2
Query: 644 DRISYEEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVP 465
D+ +E E D E P +A LI +A+ + AG A + YRD + L+
Sbjct: 245 DQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVHVLLQ 304
Query: 464 VVHSETDAVRRGALTAKLTRYMERAEEL 381
V S+ R+ + K Y++RAEE+
Sbjct: 305 GVPSDPLPARQEGVKKKAAEYLKRAEEI 332
>AK054800-1|BAB70808.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ30238 fis, clone BRACE2002050. ).
Length = 255
Score = 40.3 bits (90), Expect = 0.007
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = -2
Query: 629 EEFFSHEYLDLEHMPNKENYERAVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSE 450
E+ + L + M ++ A + I+ A+E + + AF Y++ + L+ +H +
Sbjct: 31 EQIRNRVALGVPDMTKRDYLVDAATQIRLALERGVSEDYEAAFNHYQNGVDVLLRGIHVD 90
Query: 449 TDAVRRGALTAKLTRYMERAEEL 381
+ RR A+ K+T+Y+ RAEE+
Sbjct: 91 PNKERREAVKLKITKYLRRAEEI 113
>BC056202-1|AAH56202.1| 813|Homo sapiens calpain 7 protein.
Length = 813
Score = 33.1 bits (72), Expect = 1.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -2
Query: 563 AVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVRRGALTAKLTRYMERAEE 384
AV + AV+ D GR EA Y+++ + L+ ++E + K+T Y+ER +
Sbjct: 10 AVQFARLAVQRDHEGRYSEAVFYYKEAAQALI---YAEMAGSSLENIQEKITEYLERVQA 66
Query: 383 LKSMLRGDS 357
L S ++ S
Sbjct: 67 LHSAVQSKS 75
>AB028639-1|BAA78730.1| 813|Homo sapiens PalBH protein.
Length = 813
Score = 33.1 bits (72), Expect = 1.1
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -2
Query: 563 AVSLIKRAVELDGAGRLQEAFEAYRDSLRFLVPVVHSETDAVRRGALTAKLTRYMERAEE 384
AV + AV+ D GR EA Y+++ + L+ ++E + K+T Y+ER +
Sbjct: 10 AVQFARLAVQRDHEGRYSEAVFYYKEAAQALI---YAEMAGSSLENIQEKITEYLERVQA 66
Query: 383 LKSMLRGDS 357
L S ++ S
Sbjct: 67 LHSAVQSKS 75
>AF147791-1|AAD55679.1| 957|Homo sapiens mucin 11 protein.
Length = 957
Score = 32.3 bits (70), Expect = 1.9
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Frame = -3
Query: 667 GSCSTTLTTGSRTKSSLATSTSTWSICPIKRIMSERCPS*NAPWSWTARAGCRKRSRPTG 488
GS TTL+ GS T SSL ++T+ P + P N S A S TG
Sbjct: 30 GSTDTTLSPGSTTASSLGPESTTFHSGP-GSTETTLLPD-NTTASGLLEASTPVHS-STG 86
Query: 487 TAYVS*CPS-STPRRTPSAGARSQPN*PGTWSAPRS*SQC---CAATAERAPSALPM*RH 320
+ + + P+ ST R+ S +S PN T AP + + + T+ +PS+ P
Sbjct: 87 SPHTTLSPAGSTTRQGESTTFQSWPNSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHF 146
Query: 319 TAAA 308
+A++
Sbjct: 147 SASS 150
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 30.7 bits (66), Expect = 5.8
Identities = 26/92 (28%), Positives = 39/92 (42%)
Frame = -3
Query: 664 SCSTTLTTGSRTKSSLATSTSTWSICPIKRIMSERCPS*NAPWSWTARAGCRKRSRPTGT 485
S TT TT + T S+ + TST S + + +AP + T A + T
Sbjct: 722 SAPTTSTTSAPTASTTSAPTSTSSAPTTNTTSAPTTSTTSAPITSTISAPTTSTTSTPQT 781
Query: 484 AYVS*CPSSTPRRTPSAGARSQPN*PGTWSAP 389
+ +S P+++ TP S P T SAP
Sbjct: 782 STIS-SPTTSTTPTPQTSTTSSPT-TSTTSAP 811
>BC133027-1|AAI33028.1| 126|Homo sapiens C9orf117 protein protein.
Length = 126
Score = 30.3 bits (65), Expect = 7.7
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = -3
Query: 625 SSLATSTSTWSICPIKRIMSERCPS*NAPWSWTARAGCRKRSRPTGTAYVS*CPSSTPRR 446
SS + + CP + S P + PW+ T R+G R +G P + P R
Sbjct: 58 SSTVATRPQKAACPHQESQSHGPPKESVPWAPTQRSG-NAEQRCSGEGARRRGPETRPLR 116
Query: 445 TPSAGARSQP 416
TP A P
Sbjct: 117 TPEGWAGRAP 126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,308,048
Number of Sequences: 237096
Number of extensions: 1784684
Number of successful extensions: 8757
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8754
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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