Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14n17
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 284  APLLANGPGTDAAPVR 237
            AP++  GPGT  AP R
Sbjct: 966  APMILVGPGTGIAPFR 981


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 76  TITTPALRTAIRSTKGSQTTTPRT 5
           TITT    T   +T  + TTTP T
Sbjct: 657 TITTITTTTTTTTTTTTTTTTPNT 680


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 15  VVVWLPFVLLIAVR 56
           +V WLPF +L  VR
Sbjct: 382 IVCWLPFFVLALVR 395


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 478 RKLSL*ASNASCSRPAPSSSTA 543
           R LS  A++++ + P P+SSTA
Sbjct: 828 RYLSAAATSSTSTSPRPASSTA 849


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 439 TASVSEWTTGTRKRK 483
           TA+V EW    RKRK
Sbjct: 401 TAAVDEWPRLLRKRK 415



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 79  WTITTPAL 56
           WTITTPA+
Sbjct: 495 WTITTPAI 502


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 439 TASVSEWTTGTRKRK 483
           TA+V EW    RKRK
Sbjct: 454 TAAVDEWPRLLRKRK 468



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 79  WTITTPAL 56
           WTITTPA+
Sbjct: 548 WTITTPAI 555


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,662
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)