Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14n09
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 174 6e-45
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 29 0.43
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 0.75
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 0.99
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.0
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 4.0
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 5.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 7.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 9.3
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 9.3
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 174 bits (423), Expect = 6e-45
Identities = 81/104 (77%), Positives = 95/104 (91%)
Frame = -2
Query: 314 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRK 135
+K Q S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRK
Sbjct: 8 QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67
Query: 134 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVE
Sbjct: 68 TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVE 111
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.43
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 197 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 45
K+ +KGP +P K+ T ++P S + + F+ H R+I L+S + +
Sbjct: 92 KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 0.75
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 332 VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 183
+S IEKP+A SPIH + +R L+ V GA++ + VK
Sbjct: 891 LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 0.99
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 341 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 243
A V + D+EKPQ +V+ R+ L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 135 NSLW*RFKDLGSFSDENPQESDRPTL 58
N+ W RFK+ G + DE+ E + P+L
Sbjct: 35 NNEW-RFKNAGEYFDEDNNEEEYPSL 59
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 92 MRIHKRVIDLHSPSEIVKQITSINIEPGV 6
+R+H+R I L + S+ ++ + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 360 IPAEINNFSIKNCSALNRRNL 422
+ +E+N+ IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 61 CRSITLLWILI*KRSQVFEPSPQ 129
C + L W+ KRSQ PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 140 RKTPCGEGSKTWDRFQM 90
R +P GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 186 KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDENPQESD 70
K P+ +ANQ P + N+ W + G FS+ N D
Sbjct: 916 KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 9.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 50 QRESVGRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVS 205
+R SV + SC S N P S+ + + W LG LH +S S
Sbjct: 626 KRNSVLSNKSCASSESNTPASVKQDYDDIQSWTIIEE--IQSLGVLHLSSPS 675
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 9.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +2
Query: 299 LPGVSQCLCLTLQRLPCCLLN---SGR---DKQLFNQKLFSAEPEKPHV 427
LP +C+ LT ++LP SGR D + N S P+ HV
Sbjct: 489 LPETFECISLTYRKLPDSWKQDKCSGRDDLDNSVLNDDYISVAPKPSHV 537
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,437
Number of Sequences: 5004
Number of extensions: 38292
Number of successful extensions: 108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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