Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14n07
         (694 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY825265-1|AAV74413.1|  549|Homo sapiens nucleostemin protein.         31   3.0  
BC001024-1|AAH01024.1|  549|Homo sapiens guanine nucleotide bind...    31   5.2  
AK027516-1|BAB55169.1|  549|Homo sapiens protein ( Homo sapiens ...    31   5.2  
AK027514-1|BAB55168.1|  537|Homo sapiens protein ( Homo sapiens ...    31   5.2  
AF191018-1|AAF09482.1|  560|Homo sapiens E2IG3 protein.                31   5.2  

>AY825265-1|AAV74413.1|  549|Homo sapiens nucleostemin protein.
          Length = 549

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 323 LESLKTFEDKTYIRKSSHKRIKLELNKEGYYPPDKEEPLDREFNAIGANVACKLKRMNQQ 144
           LE LK  + K   +K   K+ KLE N +    P   EP+++EF         K  + N +
Sbjct: 71  LEELKQ-QQKLDRQKEQEKKRKLETNPD--IKPSNVEPMEKEFGLCKTENKAKSGKQNSK 127

Query: 143 QRYHAEL 123
           + Y  EL
Sbjct: 128 KLYCQEL 134


>BC001024-1|AAH01024.1|  549|Homo sapiens guanine nucleotide binding
           protein-like 3 (nucleolar) protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 323 LESLKTFEDKTYIRKSSHKRIKLELNKEGYYPPDKEEPLDREFNAIGANVACKLKRMNQQ 144
           LE LK  + K   +K   K+ KLE N +    P   EP+++EF         K  + N +
Sbjct: 71  LEELKQ-QQKLDRQKELEKKRKLETNPD--IKPSNVEPMEKEFGLCKTENKAKSGKQNSK 127

Query: 143 QRYHAEL 123
           + Y  EL
Sbjct: 128 KLYCQEL 134


>AK027516-1|BAB55169.1|  549|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14610 fis, clone NT2RP1000958, weakly similar to
           AUTOANTIGEN NGP-1. ).
          Length = 549

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 323 LESLKTFEDKTYIRKSSHKRIKLELNKEGYYPPDKEEPLDREFNAIGANVACKLKRMNQQ 144
           LE LK  + K   +K   K+ KLE N +    P   EP+++EF         K  + N +
Sbjct: 71  LEELKQ-QQKLDRQKELEKKRKLETNPD--IKPSNVEPMEKEFGLCKTENKAKSGKQNSK 127

Query: 143 QRYHAEL 123
           + Y  EL
Sbjct: 128 KLYCQEL 134


>AK027514-1|BAB55168.1|  537|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14608 fis, clone NT2RP1000915, weakly similar to
           AUTOANTIGEN NGP-1. ).
          Length = 537

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 323 LESLKTFEDKTYIRKSSHKRIKLELNKEGYYPPDKEEPLDREFNAIGANVACKLKRMNQQ 144
           LE LK  + K   +K   K+ KLE N +    P   EP+++EF         K  + N +
Sbjct: 59  LEELKQ-QQKLDRQKELEKKRKLETNPD--IKPSNVEPMEKEFGLCKTENKAKSGKQNSK 115

Query: 143 QRYHAEL 123
           + Y  EL
Sbjct: 116 KLYCQEL 122


>AF191018-1|AAF09482.1|  560|Homo sapiens E2IG3 protein.
          Length = 560

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 323 LESLKTFEDKTYIRKSSHKRIKLELNKEGYYPPDKEEPLDREFNAIGANVACKLKRMNQQ 144
           LE LK  + K   +K   K+ KLE N +    P   EP+++EF         K  + N +
Sbjct: 71  LEELKQ-QQKLDRQKELEKKRKLETNPD--IKPSNVEPMEKEFGLCKTENKAKSGKQNSK 127

Query: 143 QRYHAEL 123
           + Y  EL
Sbjct: 128 KLYCQEL 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,701,149
Number of Sequences: 237096
Number of extensions: 1378165
Number of successful extensions: 2563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)