Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14n04
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.23 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.69 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.6  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   6.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.4  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.5  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 699 KKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 568
           KK   + + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 402 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 292
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 417 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 301
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 672 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 580
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 584 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 483
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 25/91 (27%), Positives = 39/91 (42%)
 Frame = -1

Query: 351  ILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIYNREYSKA 172
            +++T  +Q+L +G    P     AFGVNS+   +A  +  P     DN     N   +  
Sbjct: 813  LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV---IDNPL---NVRINAI 866

Query: 171  LTLSRTLETSGNRMAWGYNGRVIGSPEHYAW 79
            L   R+L+     M   Y  R  G P+  +W
Sbjct: 867  LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSW 897


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -1

Query: 735 IASSLPIXTVRLKKSKHLYEEKKSE--VITNVVNKL 634
           ++S L I   +L++S H+ +  KSE  ++T+V +KL
Sbjct: 763 VSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKL 798


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 319 YQILVTLSVQDLEVDLVVLPQSNELPADF 405
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,415
Number of Sequences: 5004
Number of extensions: 57347
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)