Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m20
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    67   1e-13
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 67.3 bits (157), Expect = 1e-13
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 10/211 (4%)
 Frame = -3

Query: 637 MCGASLXSHTRSVTAAHCWRTRSAQGRXXXXXXXXXXXXXXXFRI---NTNNVQMHGSYN 467
           +CGA++ S    +TAAHC    +                         + N V +H  Y+
Sbjct: 187 ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYD 246

Query: 466 M----DNLHNDVAMIIHGR-VGYTNVIQPIFLPPSHLLNNQFVGTWAWAAGYGRTSDASG 302
           +    D   ND+A++   + + + + + P  LP  H L++ F G+     G+G TS    
Sbjct: 247 IIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDS-FAGSDVTVLGWGHTSFNGM 305

Query: 301 SNTRKHQVALQVITNADCARTFGNGVIASTLCVNTQGGRSTCRGDSGGPLAFTYGGRRTL 122
            +    +  L ++T  +C + +GN ++ + +C   +G +  C+ DSGGP+ +     + L
Sbjct: 306 LSHILQKTTLNMLTQVECYKYYGN-IMVNAMCAYAKG-KDACQMDSGGPVLWQNPRTKRL 363

Query: 121 --IGITSFGAAQCQRGHPAGFARVTSFASWI 35
             IGI S+G A+C + +P G  +V S+  WI
Sbjct: 364 VNIGIISWG-AECGK-YPNGNTKVGSYIDWI 392


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 GATSSIRESEGSTGVSAAGAAPPLGVHA 208
           GATSS+    GST  S+A  A    V A
Sbjct: 113 GATSSMVPGFGSTAASSAALAAAAAVDA 140


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 401 PADLPAPLTSPQQPIRG 351
           P   P+P  SPQ P RG
Sbjct: 21  PGPQPSPHQSPQAPQRG 37


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 90   VSGDIRLVSPGSPRSLL 40
            ++  I+LVSPG  +SLL
Sbjct: 1021 LASQIKLVSPGQIKSLL 1037


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 488 NIVSVNSESTSEELSGAETQLKRASLSA 571
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 301 NVEETNSEETHQKDGSSDSVIKRTVVSS 328


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 488 NIVSVNSESTSEELSGAETQLKRASLSA 571
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 216 NVEETNSEETHQKDGSSDSVIKRTVVSS 243


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 488 NIVSVNSESTSEELSGAETQLKRASLSA 571
           N+   NSE T ++   +++ +KR  +S+
Sbjct: 535 NVEETNSEETHQKDGSSDSVIKRTVVSS 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,261
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)