Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m19
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.79 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 6   YDLNTITIYFLKFFNMNMYLLYISIIFAF 92
           Y+L    IYF++   +N Y  ++   F F
Sbjct: 214 YNLENKLIYFIEDIGLNTYYFFLRQAFPF 242


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 258 YI*IIIRLVGGLFIRIKCFCQVDIKSLIAYSSV 356
           Y+  I+ L  G++ R+ C+ Q  +KS+ A + +
Sbjct: 202 YVPCIVML--GIYCRLYCYAQKHVKSIRAVTKL 232


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 51  MNMYLLYISII--FAFLVKIPIYFVHL*LPKAHVEAP 155
           +  ++L+  I+  F+  V + +  VH   P+ HV AP
Sbjct: 303 LGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAP 339


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 333 ILYQPDKNI 307
           IL+QPDKNI
Sbjct: 763 ILFQPDKNI 771


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 333 ILYQPDKNI 307
           IL+QPDKNI
Sbjct: 853 ILFQPDKNI 861


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 6   YDLNTITIYFLKFFNMNMYLLYISIIFAF 92
           Y+L     YF++   +N Y  ++   F F
Sbjct: 214 YNLENKLNYFIEDIGLNTYYFFLRQAFPF 242


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 176 SWYYIKIRW 202
           SWY  K+RW
Sbjct: 84  SWYDYKLRW 92


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 176 SWYYIKIRW 202
           SWY  K+RW
Sbjct: 84  SWYDYKLRW 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,169
Number of Sequences: 438
Number of extensions: 1073
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)