Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m16
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    82   7e-17
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    30   0.39 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    29   0.68 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   1.2  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.3  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   6.3  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
 Frame = -1

Query: 690 LNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKL 514
           + ++G+LAG    +D QK   S     +GY +   ++     N    F  S Y +VS  +
Sbjct: 140 VGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDV 199

Query: 513 DCGVSMKWTAGS-ADTL-FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLS 340
           + G ++ W A S A+ +   + +KYALD+D  +  KIN+  +  L Y Q +RPGVT+ L 
Sbjct: 200 EAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLG 259

Query: 339 AAIDGQNFNAGGHKVGVAL 283
             +D Q      HK G++L
Sbjct: 260 LQLDTQRLGQPAHKAGLSL 278


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 491 GRRVRPTHYSELERSTRWTKTRLCTPRSTTSP 396
           G  V+PT  SE+++ T W K  L  P ST+SP
Sbjct: 45  GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = -2

Query: 560 VKISAVQSTRRYLTSWTAASA*SGRRVRPTHYSELERSTRWTKTRLCTPRSTTSPSSVLV 381
           V+ S+V ST  YLT    AS+      +   +S +E       T   +PR+T +PS+   
Sbjct: 222 VRTSSVSST--YLTQDREASS-KNCLSKALAFSSIEPPASSAST---SPRNTPTPSNNGT 275

Query: 380 T-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 249
           + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 276 SINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 385 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 209
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 660 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 520
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 632  FAFCVSNWVCTPASQPW*FSTAATSTTGPGQV 727
            F F  S+W   P  +PW FST A    G  +V
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDGMHEV 1706


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 544 FNLPEGI*QAGLRRQHEVDGGFGRHIIRSWSEVRAGPRRVS--ARQDQQQVPHRSWL 380
           +N  +G  +     QH VD       I  WS ++   RRV+    Q+QQ +P  S L
Sbjct: 79  YNFMDGFNKRTDTLQHRVDDKKILKTIEKWSCIKEKLRRVANITEQEQQCIPAESSL 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,093
Number of Sequences: 5004
Number of extensions: 70056
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)