Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14m16
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 65 6e-11
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 60 1e-09
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 58 7e-09
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 54 2e-07
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 45 7e-05
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 42 7e-04
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.2
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330... 30 2.2
12_01_0767 - 6956758-6957138,6957491-6957581,6957796-6957861,695... 29 3.8
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 29 3.8
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 3.8
11_06_0707 + 26467214-26470309 29 5.0
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 5.0
11_06_0513 + 24466131-24469487 28 6.6
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 28 6.6
06_03_0399 - 20403488-20405092 28 6.6
03_02_0578 + 9603118-9605633,9605766-9605781 28 6.6
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 8.7
02_03_0100 + 15230199-15231002 28 8.7
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 64.9 bits (151), Expect = 6e-11
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Frame = -1
Query: 714 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSI 538
P+V + V + G FDT F+K N L + + D ++N G S
Sbjct: 280 PLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASY 339
Query: 537 YQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPG 358
Y KVS G + + S + G ++ALD+ ++ A+ NN + Q + RP
Sbjct: 340 YHKVSKTSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEFRPK 399
Query: 357 VTLTLSAAIDGQNFNAGGHKVGVALELEP 271
+T+S +D + + KVG++L L+P
Sbjct: 400 SLVTISTEVDTKAIDKSS-KVGLSLVLKP 427
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 60.5 bits (140), Expect = 1e-09
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Frame = -1
Query: 720 PGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGG 544
P PVV+ + QG G FDT KF+K + A+G D+ A D G
Sbjct: 162 PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKV 221
Query: 543 SIYQKVSDKLDCGVSMKWT--AGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQK 370
S + DK V + T + + VG Y +D + ++ A++NN + Q +
Sbjct: 222 SGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQHE 281
Query: 369 LRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 271
++P LT+S D + + K G+AL L P
Sbjct: 282 VKPKSVLTISGEFDTKALDR-PPKFGLALALRP 313
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 58.0 bits (134), Expect = 7e-09
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Frame = -1
Query: 714 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSI 538
P+V+++ V + G DT F+K + L + D A ++N G S
Sbjct: 233 PLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASY 292
Query: 537 YQKVSDKLD--CGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 364
Y V+ + G + + + + G ++ALD ++ A+ NN ++ Q + R
Sbjct: 293 YHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWR 352
Query: 363 PGVTLTLSAAIDGQNFNAGGHKVGVALELEP 271
P LTLSA +D + + KVG++L L+P
Sbjct: 353 PKSFLTLSAEVDTKAIDKAS-KVGLSLVLKP 382
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 53.6 bits (123), Expect = 2e-07
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Frame = -1
Query: 714 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGS 541
P+V+++ V + GV FDT + F+K N AL + D +LH N ++G S
Sbjct: 126 PMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIAS 184
Query: 540 IYQKVS--DKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKL 367
Y V G + + ++ G++++LD ++ A+ NN + Q +
Sbjct: 185 YYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQHEW 244
Query: 366 RPGVTLTLSAAIDGQNFNAGGHKVGVALELE 274
RP +T+S +D + KVG++L L+
Sbjct: 245 RPKSLITISGEVDTKAIEK-STKVGLSLVLK 274
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 44.8 bits (101), Expect = 7e-05
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = -1
Query: 714 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF-ALHTNVDNGKDFGGSI 538
P++++AA + AG FD+ A +K N + Y DF A D G+ S
Sbjct: 839 PLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGETLKASY 898
Query: 537 YQKVSDKLDCGVSMKWT--AGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 364
++ V+ + T + + F +G+ +A+D L + +N +G+ Q + R
Sbjct: 899 IHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVLCQHEWR 958
Query: 363 PGVT 352
P T
Sbjct: 959 PKST 962
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/99 (25%), Positives = 42/99 (42%)
Frame = -1
Query: 645 TQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTL 466
T + +S+ F+ Y+ DF + N +GG+ Q V+ L G W +
Sbjct: 173 TNEPHYSQGMFSFDYKGKDFRSQFQLGNNAFYGGNYIQSVTKNLSLGTEAFWLGQQRKSG 232
Query: 465 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTL 349
G A+Y + + +I L+ L Y QK+ V+L
Sbjct: 233 VGFVARYDTKKMVAT-GQIATTGLVSLSYVQKVSEKVSL 270
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -1
Query: 543 SIYQKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLR 364
S QKVS+K+ + + D G Y L Q L KI+ ++ +++L
Sbjct: 259 SYVQKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQ-CRLRGKIDTNGVVSALLEERLT 317
Query: 363 PGVTLTLSAAID 328
PGV LSA +D
Sbjct: 318 PGVNFVLSAELD 329
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3
Query: 630 TLLFVYQTGCVHQPANPGSLVLL 698
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>12_01_0418 -
3304741-3304904,3305579-3305762,3307254-3307347,
3308530-3308882,3309140-3309274,3309354-3309392,
3309587-3309652,3309739-3309834,3310291-3310527,
3310602-3310722,3310854-3310889,3313062-3313159,
3313298-3313591,3313842-3313904,3314280-3314438,
3314557-3314655
Length = 745
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -1
Query: 483 GSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGG 304
G+AD+ FG+G L S + +++ S +GL QKL+P V + ++ + F A G
Sbjct: 645 GNADSTFGMG----LTSGQSQFSALDSSSRLGLKPWQKLKPSVEILCNSQANHYAFLALG 700
Query: 303 HKVGV 289
V
Sbjct: 701 SYTSV 705
>12_01_0767 -
6956758-6957138,6957491-6957581,6957796-6957861,
6958079-6958194
Length = 217
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 529 GI*QAGLRRQHEVDG-GFGRHIIRSWSEVRAGPRR 428
G+ QAG RR+ V G GFG W E R G R
Sbjct: 167 GLAQAGHRREAVVVGDGFGTEAAPHWGEARGGRER 201
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -2
Query: 494 SGRRVRPTHYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA 357
S + + TH++ RS+ ++ +RLC P TT+P T+ + +A
Sbjct: 349 SSAKAQGTHHASSVRSS-FSNSRLCLPSRTTNPPPKNATSNSKTEA 393
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 537 YQKVSDKLDCGVSMKWTAGSADTLFGVG 454
+QKV D+LDCG+ + T G + +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +3
Query: 516 ACQIPSGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGCVHQPANPGSLVL 695
A Q+ S + L L +I N ++ LL + T H P + GSL
Sbjct: 556 ALQVDSSLFEKLTYLRVLDLTNSHVQRIPNYIENMIHLRLLDLDGTDISHLPESIGSLQN 615
Query: 696 LQRLQLDRAKS 728
LQ L L R KS
Sbjct: 616 LQILNLQRCKS 626
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 618 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 716
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 561 HCLRLCGEQSHQIGNLEQS-CSWRTLLFVYQTGC---VHQPANPGSLVLLQRLQLD 716
H LR IG L S CS R L + + C P N GS+ LQRL L+
Sbjct: 686 HSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLE 741
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 268 ENITKPTLVDKYILLSQPNSVYRESISIVEI 176
E + + T+VDK I LS PNSV + + E+
Sbjct: 141 EGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = -1
Query: 699 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVS 523
AA + GW+ GV+ + + +K + + + Y+ D ++ + D G + Y+K +
Sbjct: 439 AAAAKHMGWIRGVYGEMEPYVSKNPRGAY-VNYRDLDLGVNDDGDGGGGVARARYEKAT 496
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = +2
Query: 548 PKSLPLSTFVWRAKSPDW*PRAKLFLENFAFCVSNWVCTPASQPW*FSTAATSTTGPGQV 727
PK P + +WR PDW FL +F N V +PA + S ATS T P V
Sbjct: 223 PKVTPNNDTLWRTWLPDW-----TFLHESSFAAHNQV-SPAMIKY-QSGYATSLTAPSAV 275
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 350 LHCLLPSMDRTSMQVA 303
LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737
>02_03_0100 + 15230199-15231002
Length = 267
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 520 QAGLRRQHEVDGGF-GRHIIRSWSEVRAGPRRVSARQDQQQVPHRSWLPTETTP 362
QA L ++ GG RH+ S V A RVS+R+ ++ + H PT TP
Sbjct: 172 QARLHDGNQDGGGAPSRHVPSSGRRVEAQLSRVSSRRQRRTMKHSIPEPTIETP 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,143,087
Number of Sequences: 37544
Number of extensions: 482214
Number of successful extensions: 1272
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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