Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m16
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...   101   4e-22
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.5  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.5  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   4.5  
Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score =  101 bits (243), Expect = 4e-22
 Identities = 48/148 (32%), Positives = 77/148 (52%)
 Frame = -1

Query: 714 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIY 535
           PV++ A V +  GWL G    FD+   K +  + A G+ +  + LH+ V N  DFG S+Y
Sbjct: 136 PVINAAGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLY 195

Query: 534 QKVSDKLDCGVSMKWTAGSADTLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGV 355
            KV+  ++ G  + W  G     + +  KYA  +D ++ AK+N+ S + +     L P +
Sbjct: 196 HKVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPAL 255

Query: 354 TLTLSAAIDGQNFNAGGHKVGVALELEP 271
            LTLS   +    +A  HK G+ LE +P
Sbjct: 256 KLTLSTQFNLAANDA--HKFGLGLEFDP 281


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 666 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWT 487
           G   QF+T++    K     GY+    +L  N    +DFG +      +++DC VS KWT
Sbjct: 657 GNRNQFETEEE--CKQICLPGYEKSK-SLIPNNQLLEDFGNTEVDDGGERVDCEVS-KWT 712

Query: 486 A-GSADTLFGVGAK 448
           A GS     G G K
Sbjct: 713 AWGSCSVSCGRGKK 726


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 423 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 271
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 40  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 423 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 271
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 38  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -2

Query: 446 TRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPR 267
           T+ ++TR  T  STT+      T+  +A   P     PS    ++  AT   LP+  S R
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAA--PQASTEPSEATEALATATPADLPTKPSGR 295

Query: 266 KYNQTYSCR*IHTVVTTK 213
           +       R + +  TTK
Sbjct: 296 EITTITGTRKLSSTSTTK 313


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -2

Query: 494 SGRRVRP---THYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMD 324
           SG R  P    HY  +  + + T    CTPR+TT+ ++   T      A P     P+  
Sbjct: 261 SGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTT-----ALPPCVYTPAPP 315

Query: 323 RTSMQVATRLALPSNSSPRKYNQT 252
            T+       A P+  +PR Y+ T
Sbjct: 316 ATAPPAT---ATPATQTPRTYSTT 336


>Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical
           protein F35E2.9 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -1

Query: 648 DTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADT 469
           D    K S + F   + S    +H N+       GS+++  + KL  G S K      +T
Sbjct: 455 DENSIKRSDSGFDAYFFSHSIWMHKNITVNMSTSGSLFKDPNSKL-YGTSTK-IVNDKET 512

Query: 468 LFGVG 454
           +FG+G
Sbjct: 513 VFGIG 517


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 235 YILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAF 125
           Y+LL+ P+  YR   SI+   CI P ++ + + F  F
Sbjct: 79  YVLLALPDYHYRYQKSIMSSICIPPPSYASCFLFVHF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,864,379
Number of Sequences: 27780
Number of extensions: 409222
Number of successful extensions: 962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)