Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m11
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.53 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   8.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 370 NNDFNYEKLTNTFIRIIGFNVF 305
           N+D+N E   N FI  IG N +
Sbjct: 211 NHDYNLENKLNYFIEDIGLNTY 232


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 155 TKESCNSLSH*KSFTIYSAR*IIENSCVIMIFIYF 51
           T + C  L +   F IYS+       C+IM+F+Y+
Sbjct: 332 TPDQC--LFYNTDFIIYSSLSSFYIPCIIMVFLYY 364


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 370 NNDFNYEKLTNTFIRIIGFNVF 305
           N+D+N E     FI  IG N +
Sbjct: 211 NHDYNLENKLIYFIEDIGLNTY 232


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  NHNYTAVLDYSSCRIYCE*FLMRQRVTRLFGFST 164
           ++ YT VLD  +  I C+   ++++  R  G +T
Sbjct: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTT 387


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  NHNYTAVLDYSSCRIYCE*FLMRQRVTRLFGFST 164
           ++ YT VLD  +  I C+   ++++  R  G +T
Sbjct: 65  SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTT 98


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 525 LCPI*DY*QVVIYVLPSTRIIV 460
           LCP+  Y Q++  V+PS   ++
Sbjct: 318 LCPLYKYLQLIENVIPSNEELI 339


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 525 LCPI*DY*QVVIYVLPSTRIIV 460
           LCP+  Y Q++  V+PS   ++
Sbjct: 333 LCPLYKYLQLIENVIPSNEELI 354


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 379 NNSVPTTAINYNXVNIRELNIKTNINTY 462
           NN+  +  + YN +NI ++ +   +  Y
Sbjct: 315 NNNYNSKKLYYNIINIEQIPVPVPVPIY 342


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 379 NNSVPTTAINYNXVNIRELNIKTNINTY 462
           NN+  +  + YN +NI ++ +   +  Y
Sbjct: 326 NNNYNSKKLYYNIINIEQIPVPVPVPIY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,047
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)