Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m09
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    27   2.3  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.1  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   7.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   9.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.5  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 45  QRYLCTLKLATFSIREHVSSDTSDLPANK--TCHPHS 149
           QR LC +K  +FSI EH+   T+ +   K  +C  H+
Sbjct: 26  QRNLCIVKEPSFSIEEHIKCFTTCINTYKPFSCLKHA 62


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 360 YKIFVFGHGLPNIQYITQAHLHCALDI 280
           YK+ V   G+PN+ Y  Q  LH  L I
Sbjct: 59  YKLLVGNAGIPNVYYFGQEGLHNILVI 85


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 443 FVLHCWFFFLVK*CIFYGTTVSFTYT 520
           F L C++  L   C+ Y T V+ T T
Sbjct: 142 FFLECFYLNLYSICVLYSTFVAITKT 167


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 139  IHTRSEPAKQIDRLSV*NRHVDVVAIRDIFTNNSQDN 249
            + +  E A Q  RL++ N H + V  R +  NN  DN
Sbjct: 1373 LKSEEEEASQHRRLNLVNNHKEHVLERAMSENNKMDN 1409


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -3

Query: 398 ADTALPKTYNYVGTKFS---FSDTVSLT 324
           ADTA+P  Y+Y  TK S   +SD+ ++T
Sbjct: 914 ADTAVPGVYHYEFTKLSDSLYSDSDAVT 941


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 336 GLPNIQYITQAHLHCALDIITKPLFFFFNIVLRVICENIPNSN-HIYMS 193
           G   +QY    ++   LD +   L  +  I+   + +N+ N+N H+Y++
Sbjct: 773 GSIRLQYACLQYMLAVLDGLNIDLLLYSRILSSKVRDNLQNNNLHVYLT 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,810
Number of Sequences: 5004
Number of extensions: 57780
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)