Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m07
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    29   0.62 
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   4.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.4  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   5.8  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   7.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   7.7  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 25/70 (35%), Positives = 33/70 (47%)
 Frame = +3

Query: 171 GELLLSWPRAQPNAPARHQETPDDRDISTIAP*FWFCSWSHLKFLE*RP*VLRPLSTRNQ 350
           G  LLS P++ P++PA H+ TP         P   F S    KFL+  P    PL  R Q
Sbjct: 156 GLSLLSLPKSVPHSPAMHKRTPSS------DPNNPFGSTFANKFLDHIPAEPLPLPARPQ 209

Query: 351 LSSRIPF*QP 380
           +S    F +P
Sbjct: 210 ISDLSFFRKP 219


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 528 WAPQPSILSHPNCVLFITHGG 466
           W P P ++S PN VL +   G
Sbjct: 164 WKPTPGLMSLPNVVLHVDENG 184


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  HLFEKMTVKDFLSNKFFYKRLAKLLIQRPIDLSTTSGRKA 146
           HLF  +    F  + F Y  LAKL++ +   LS  S  +A
Sbjct: 370 HLFFSLRHNSFFESYFIYFFLAKLILLKKTVLSLASTEQA 409


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 371 LTALWTLIN*SPKTGIPTI 427
           +  LWTL+  SP+ G PTI
Sbjct: 305 IALLWTLLKQSPQAGKPTI 323


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 587 IVCFNSPNIFTRFCFISSGISVLFKF 664
           I CFNSP++ T    +SS  S L  F
Sbjct: 137 ICCFNSPSLKTSLIAVSSAESPLIFF 162


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 149 CSAGERRWRAPLVLATCSTQCTS 217
           C  G + WR P+  A+ + QC S
Sbjct: 187 CVCGRQNWRRPVNFASHAKQCPS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,585
Number of Sequences: 5004
Number of extensions: 65911
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)