Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m06
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4 prot...    29   2.9  
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical
           protein Y66A7A.4 protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 80  ND*NEIIHFHVTNEIVDHILFCLIL 6
           N  NEII  HV NE+V H  FC IL
Sbjct: 414 NSINEIIERHVDNEVVPH-PFCAIL 437


>AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4
           protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 80  ND*NEIIHFHVTNEIVDHILFCLIL 6
           N  NEII  HV NE+V H  FC IL
Sbjct: 414 NSINEIIERHVDNEVVPH-PFCAIL 437


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 344 IHYI-LMEFVA*VVFKNYIEKETKIHRKFYNRYLNV 448
           +HYI +++FV   +F++YI+   K     YN YL +
Sbjct: 256 MHYIKILKFVLIAIFQSYIQFLKKTKYILYNCYLTI 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,672
Number of Sequences: 27780
Number of extensions: 277531
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)