Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m05
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    30   0.36 
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    29   0.47 
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   1.9  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    27   1.9  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   5.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   7.7  

>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 368 GYRPLVENDVNLKKLFDKLQAAKTQSEKD 282
           GYRPL  N + + K+  K Q +++Q E+D
Sbjct: 62  GYRPLSANQICVPKVESKTQVSQSQDEED 90


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 512 LMETIKKYADEHNFSLNPYDMKKRKSTILTNSFHRAGIVVPYNKKTQLGYRPLVENDVNL 333
           L++ I  Y      SL   D  K  + +   +++ +   + Y K   LG+RP +  +  L
Sbjct: 298 LVKFICDYFLYRKLSLKNLDYSKYITFVQDRNYNDSRYSLNYEKIKSLGWRPQIPLETGL 357

Query: 332 KKLFDK 315
           +KL D+
Sbjct: 358 RKLIDE 363


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 596 LADNIFGAVYLHLKNENKSPFTALACKKLMETIK 495
           L D  FG VYL  + E    +  +A KKL  + K
Sbjct: 27  LGDGSFGTVYLAQRKEKNGLYETVAVKKLKNSSK 60


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 160 SNSFKPEQKRLIPISTPVPKSHSSIAMLAY 249
           SNS  P QKR IP +  + +SH  +++  Y
Sbjct: 108 SNSSSPSQKRDIPSNEKLVQSHEPVSVQMY 137


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 499 IVSINFLHANAVNGDLFSFFKCKYTAPKILSANGLIWQSFALSLLAKKTGSSFGSSL 669
           +VS N    N    D  SF K + T  +   ANG IW +    L   +  SS  + L
Sbjct: 57  VVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETSHLDKSRDLSSHSNGL 113


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 605 IKPLADNIFGAVYLHLKNENKSPFTALACKKL 510
           IKP++   FG VYL  KN     +     +K+
Sbjct: 567 IKPISKGTFGTVYLSRKNTTGEIYAIKVLRKV 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,545
Number of Sequences: 5004
Number of extensions: 70900
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)