Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m05
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010367-1|AAH10367.1|  346|Homo sapiens chromosome 4 open readi...   142   8e-34
AK000541-1|BAA91241.1|  346|Homo sapiens protein ( Homo sapiens ...   142   8e-34

>BC010367-1|AAH10367.1|  346|Homo sapiens chromosome 4 open reading
           frame 27 protein.
          Length = 346

 Score =  142 bits (345), Expect = 8e-34
 Identities = 79/211 (37%), Positives = 121/211 (57%), Gaps = 6/211 (2%)
 Frame = -2

Query: 683 HIGYFRDDPNDEPVFLASNDSAKDCQIKPLADNIFGAVYLHLKNENKSPFTALAC---KK 513
           H+GYFRD P++ PV++  N++ K+C I P  DN+F AV L L  + K           K 
Sbjct: 128 HMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKKKINLLKN 187

Query: 512 LMETIKKYADEHNFSLNP--YDMKKRKSTILTNSFHRAGIVVPYNKKTQLGYRPLVENDV 339
           + E + + A E  +SL      MK+R   ++T +FH AG+VVP +K   +GYR L E D 
Sbjct: 188 IDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKN-DVGYRELPETDA 246

Query: 338 NLKKLFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECDFGTGVEMGINLFCSGLKELE 159
           +LK++   +  A +  E+    + +Q ++T+   A DECD+G G+E+G++LFC G     
Sbjct: 247 DLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYG-SHYF 305

Query: 158 SNVLGCICP-AYNLLNRGEFSKIIQAHMKYR 69
             V G + P AYNLL R  F++II+ H+  R
Sbjct: 306 HKVAGQLLPLAYNLLKRNLFAEIIEEHLANR 336


>AK000541-1|BAA91241.1|  346|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20534 fis, clone KAT10950. ).
          Length = 346

 Score =  142 bits (345), Expect = 8e-34
 Identities = 79/211 (37%), Positives = 121/211 (57%), Gaps = 6/211 (2%)
 Frame = -2

Query: 683 HIGYFRDDPNDEPVFLASNDSAKDCQIKPLADNIFGAVYLHLKNENKSPFTALAC---KK 513
           H+GYFRD P++ PV++  N++ K+C I P  DN+F AV L L  + K           K 
Sbjct: 128 HMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKKKINLLKN 187

Query: 512 LMETIKKYADEHNFSLNP--YDMKKRKSTILTNSFHRAGIVVPYNKKTQLGYRPLVENDV 339
           + E + + A E  +SL      MK+R   ++T +FH AG+VVP +K   +GYR L E D 
Sbjct: 188 IDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKN-DVGYRELPETDA 246

Query: 338 NLKKLFDKLQAAKTQSEKDNLLSDLQPIITYASIAMDECDFGTGVEMGINLFCSGLKELE 159
           +LK++   +  A +  E+    + +Q ++T+   A DECD+G G+E+G++LFC G     
Sbjct: 247 DLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYG-SHYF 305

Query: 158 SNVLGCICP-AYNLLNRGEFSKIIQAHMKYR 69
             V G + P AYNLL R  F++II+ H+  R
Sbjct: 306 HKVAGQLLPLAYNLLKRNLFAEIIEEHLANR 336


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,229,842
Number of Sequences: 237096
Number of extensions: 2311877
Number of successful extensions: 4481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4477
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)