Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m05
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   6.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.3  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 515 KLMETIKKYADEHNFSLNPYDMKKRKSTILTNS 417
           K  +T    AD   F+L  YD +  +S  +TN+
Sbjct: 192 KCKDTFAYIADVTGFALLVYDFRNSRSWRITNN 224


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 281 NLLSDLQPIITYASIAMDECDFGTGVEMGIN 189
           N ++ +  II    + +D CD   GV+ G++
Sbjct: 101 NDINKIDSIINIIRVRVDACDRLWGVDTGVD 131


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 210 WCGNGNQS 187
           WCG+GN+S
Sbjct: 36  WCGHGNKS 43


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 210 WCGNGNQS 187
           WCG+GN+S
Sbjct: 41  WCGHGNKS 48


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +1

Query: 40  FNNETFGPFRRYFMCACIILLNSPLFKRLYAGQMQPKT 153
           +NN+ F     Y+      ++N P +   Y G    +T
Sbjct: 184 YNNKNFVDLSDYWKSGTWDIINVPAYLNTYKGDFPTET 221


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 577 PKILSAN--GLIWQSFALSLLAKKTGS 651
           P+  SA   G++W  FA+ ++A  T +
Sbjct: 631 PRSFSARVLGMVWAGFAMIIVASYTAN 657


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +1

Query: 91  IILLNSPLFKRLYAGQMQPKTLDSNSFKPEQKRLIPISTPVPKSHSSIAMLAYVII 258
           +ILL  P      +  MQP    S    PE + +I +    P     I     VI+
Sbjct: 21  VILLIIPSKCEAVSNDMQPLEARSADLVPEPRYIIDVPPRCPPGSKFIKNRCRVIV 76


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 210 WCGNGNQS 187
           WCG+GN+S
Sbjct: 41  WCGHGNKS 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,763
Number of Sequences: 438
Number of extensions: 4697
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)