Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m03
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    60   3e-10
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    42   1e-04
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    30   0.37 
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    28   1.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    28   1.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   1.5  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.6  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.5  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    26   4.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   6.0  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.0  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
 Frame = -3

Query: 642 DGGWAQYVKVPQDQVYLLPDGVSTEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGAGII 463
           DG    Y    +D    LP  +S E+G L EP S   H   R + L  G ++L++G G +
Sbjct: 123 DGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHAMTRGN-LKCGSRVLVMGCGTV 181

Query: 462 GNLWVTSLHQLGHRDVTVSEMNKVRLEIVNKLETGYRLVTP----------DVLDKEKQL 313
           G L +      G  D+   + +  R+E   K   G +  TP          D   + KQ 
Sbjct: 182 GLLMMAVAKAYGAIDIVAVDASPSRVEFAQKY-VGAKPFTPIAAKENESLPDYAQRYKQA 240

Query: 312 -------YDVIIDCTGVGKVMEISFNYLRHGGKYVLFGCCPPTHQASINPFQIYDKELTI 154
                  +D  +D TGVG  +  +   L+ GG +V  G   P     IN   I + E+ +
Sbjct: 241 IIEKYGEFDFAVDATGVGICIHTAVLALKRGGTFVQAGNGKPVIDFPIN--HIINYEINV 298

Query: 153 IG 148
           +G
Sbjct: 299 LG 300


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 3/193 (1%)
 Frame = -3

Query: 663 STVGIWRDGGWAQYVKVPQDQVYLLPDGVS-TEQGGLCEPYSCVAHGYDRASPLLVGEKI 487
           S +   +DG  A+Y  +P+     +P  +S TE   +  P++       R       + +
Sbjct: 94  SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAYLALSRGETK-GSDIV 152

Query: 486 LIVGA-GIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNKLETGYRLVTPDVLDKEKQLY 310
           L+VGA G +G+         G + +TVS      +  V  ++   + V  ++++K     
Sbjct: 153 LVVGALGAVGSAVCQIAEDWGCKVITVSRSGSTDINTV--VDPELKRVH-ELVEK----V 205

Query: 309 DVIIDCTGVGKVMEISFNYLRHGGKYVLFGCCPP-THQASINPFQIYDKELTIIGVKINP 133
           DV+ID  G   +M+ + N L  GG+          + + S +  QIY K L IIG     
Sbjct: 206 DVVIDTVGDPLLMKSALNQLGIGGRLSYISAPKQGSIEFSYDMKQIYRKNLKIIGCNSLL 265

Query: 132 FSFPNALGWLKAM 94
            S   +   LK M
Sbjct: 266 LSLVESNSLLKNM 278


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -3

Query: 492 KILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNK 370
           KILI+GAG +G   +  L   G RD++V +M+ + +  +N+
Sbjct: 46  KILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNR 86


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 6/146 (4%)
 Frame = -3

Query: 639 GGWAQYVKVPQDQVYLLPDGVSTEQG-GLCEPYSCVAHGYDRASPLLVGEKILIVGA-GI 466
           G  A ++      V+ LPDGVS  +G G             R   +  G K++I GA G 
Sbjct: 118 GSCATHIVTGDKDVWHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGG 177

Query: 465 IGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNKLETGYRL--VTPDVLDKEKQL--YDVII 298
           +G   V     L     T+S      L++   L   + L     +++++   L  YD + 
Sbjct: 178 VGTFAVALAKALECEVTTISSTE--NLDLCKSLGATHTLDYKKDNLVERLADLGPYDFVF 235

Query: 297 DCTGVGKVMEISFNYLRHGGKYVLFG 220
           DC     +   S  +++  G +   G
Sbjct: 236 DCVNDNVLYRASSKFVKPDGAFFGIG 261


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 211 WTASE*HVFPAVTKIIETDLHHFTDACAVDDDVIQLFLLVQN 336
           W A   HV+  +  +    +H FT A A  DD I+LF+ V +
Sbjct: 291 WAAGS-HVYINIPSLSYWQVHPFTLASAPFDDFIELFVAVHS 331


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 5   PALKSFRALSYSDRAYVFTPSFS*FTYL 88
           PAL SFR+ ++S R YV +P  + F  L
Sbjct: 631 PALLSFRSSNFSKRPYVLSPILNGFLKL 658


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = -3

Query: 492 KILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNK 370
           K+L+VGAG IG   + +L   G ++V + +++ + L  +N+
Sbjct: 27  KVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNR 67


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 211 WTASE*HVFPAVTKIIETDLHHFTDACAVDDDVIQLFLLVQ 333
           W A   H++  +  +    +H FT A    DD I+LF+ V+
Sbjct: 298 WGAGN-HMYINIPSLSYWQIHPFTIASVPSDDFIELFVAVR 337


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 536  WRTATIALPLYLSERKSSSSE-PELLVTCGSR 444
            W TA IAL  Y  E   S+ E  +LLV C S+
Sbjct: 1287 WNTALIALMTYYREAAISTPELLDLLVKCESK 1318


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 257 LKLISITLPTPVQSMMTSYSCFSLSRTSGVTNLYP 361
           L LIS + P P  S++T  S  +LSR +    LYP
Sbjct: 160 LHLISYSSPIPDPSLVTPSSDVNLSRITIPYGLYP 194


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 11  LKSFRALSYSDRAYVFTPSFS*FTYLLPMAFSQPKALGKLNGLILTPMMVSSL 169
           LKS   +++++  + F P  S +TY LP+     +AL   +   + P++ S L
Sbjct: 627 LKSLLLIAFANNGFAFHPKSSSWTYDLPVINRSFEALSSYD---IPPLLASLL 676


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 232 VFPAVTKIIETDLHHFTDACAVDDDVIQLFLLVQNIGSDQPVSSLQF 372
           VF A   ++  +   ++D   V  DV++ F  +    S+QP+  +QF
Sbjct: 46  VFQANNVLLFPEEESYSDIFHVPQDVMKEFFTLIESSSNQPLRQIQF 92


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 453 WVTSLHQLGHRDVTVSEMNKVRLEIVNKLETGYRLVTPDVLDKEKQLYD 307
           +V +LH+L   D+T  ++  +RL +  +L+   +      LD  K+ Y+
Sbjct: 21  FVETLHELLPEDITYDDLGSLRLSLSERLQESVK-----KLDANKKTYE 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,959
Number of Sequences: 5004
Number of extensions: 61801
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)