Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m03
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    29   2.4  
DQ178246-1|ABA18185.1|  482|Caenorhabditis elegans TPX2-related ...    29   4.3  
DQ178245-1|ABA18184.1|  507|Caenorhabditis elegans TPX2-related ...    29   4.3  
AC025716-4|AAL32238.1|  482|Caenorhabditis elegans Tpx2 (targeti...    29   4.3  
AC025716-2|AAK39617.1|  507|Caenorhabditis elegans Tpx2 (targeti...    29   4.3  
Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membran...    28   7.4  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    28   7.4  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
 Frame = -3

Query: 642 DGGWAQYVKVPQDQVYLLPDGVSTEQGGLCEPYSCVAHGYDRASPLLVGEKILIVGAGII 463
           +G  +++V    D  + LPD +S E G L EP S VA    R   + +G+KIL++GAG I
Sbjct: 122 NGALSRFVVHDADFCFKLPDNLSFEDGALLEPLS-VAIQACRRGTVQMGQKILVLGAGPI 180

Query: 462 GNLWVTSLHQLGHRDVTVSEMNKVRLEIVNKLETGYRL---------VTPDVLDK-EKQL 313
           G L + +   +G   V ++++N  RL +   L     +         V  +++     Q 
Sbjct: 181 GVLNLLTAKAIGASKVVITDLNDERLALARLLGADATINVMGKRSDEVRSEIIKAFGDQQ 240

Query: 312 YDVIIDCTGVGKVMEISFNYLRHGGKYVLFG 220
             V I+CTGV   +E +    R GG  VL G
Sbjct: 241 PHVSIECTGVQPCVETAIMTTRSGGVVVLVG 271


>Z81044-9|CAB02812.2|  677|Caenorhabditis elegans Hypothetical
           protein C30H6.6 protein.
          Length = 677

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = -3

Query: 687 YCLT-AGINSTVGIWRDGGWAQYVKVPQDQVYLLPDGVSTEQGGLCEPYSCVAHGYDRAS 511
           YCL  AG+N  VG  R   ++  ++  QD  +   D     + G       V  GY  +S
Sbjct: 157 YCLQIAGVN-IVGSLRKMVYSSIIR--QDMTFF--DKNMVGEIGSRHAADTVIVGYSVSS 211

Query: 510 PLLVGEKILIVGAGIIGNLWVTSL 439
            L  G + ++VG G IG + +TSL
Sbjct: 212 SLRAGVRAVLVGVGSIGMMLMTSL 235


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -3

Query: 504 LVGEKILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNK 370
           +V  KIL++GAG IG   + +L   G R V V +++ + +  +N+
Sbjct: 11  IVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNR 55


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +1

Query: 175 NLEWIY----RSLMSRWTASE*HVFPAVTKIIETDLHHFTDACAVDDDVIQLFLLVQNIG 342
           NL++++    + LM RWTA   ++ P++T +  +D+H        +DD  QLF    N+ 
Sbjct: 123 NLQYLHIEKDQKLMKRWTAKIGNMLPSLTHLTMSDVH------INEDDFYQLFGNFSNLR 176

Query: 343 S 345
           S
Sbjct: 177 S 177


>DQ178246-1|ABA18185.1|  482|Caenorhabditis elegans TPX2-related
           alternative variant b protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 476 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 583
           P ++ +S  S   +R  PC T  + +H P    DTP
Sbjct: 21  PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56


>DQ178245-1|ABA18184.1|  507|Caenorhabditis elegans TPX2-related
           alternative variant a protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 476 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 583
           P ++ +S  S   +R  PC T  + +H P    DTP
Sbjct: 21  PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56


>AC025716-4|AAL32238.1|  482|Caenorhabditis elegans Tpx2 (targeting
           protein for xenopusklp2)-like protein 1, isoform b
           protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 476 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 583
           P ++ +S  S   +R  PC T  + +H P    DTP
Sbjct: 21  PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56


>AC025716-2|AAK39617.1|  507|Caenorhabditis elegans Tpx2 (targeting
           protein for xenopusklp2)-like protein 1, isoform a
           protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 476 PTMRIFSPTSRGEARS*PCATQEYGSHRPPCSVDTP 583
           P ++ +S  S   +R  PC T  + +H P    DTP
Sbjct: 21  PKVKDYSRLSSSPSRDQPCETSYFENHFPSLECDTP 56


>Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical
           protein F59F5.3 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -3

Query: 489 ILIVGAGIIGNLWV---TSLHQLGHRDVTVSEMNKVRLEIVN 373
           +LI+GAG+I  ++V    SL Q  +  V+ +++ + R+E +N
Sbjct: 324 LLIIGAGLILTIFVILTKSLRQNNYNKVSTTDVRETRIEELN 365


>U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membrane
           ruffles in embryoprotein 1 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 504 LVGEKILIVGAGIIGNLWVTSLHQLGHRDVTVSEMNKVRLEIVNK 370
           L   KIL++GAG +G   + +L   G R + V +M+ + +  +N+
Sbjct: 40  LQNTKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNR 84


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 675 AGINSTVGIWRDGGWAQYVKVPQD 604
           AG ++ + IWR+    Q++KVP+D
Sbjct: 272 AGDDNVITIWRENLQGQWIKVPRD 295


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 258 NYLRHGGKYVLFGCCP 211
           NY+RH GK + +G CP
Sbjct: 433 NYVRHNGKCIYWGDCP 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,224
Number of Sequences: 27780
Number of extensions: 352164
Number of successful extensions: 1003
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)