Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14m03
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   0.70 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    25   0.70 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 378 VNKLETGYRLVTPDVLDKEKQLYDVIIDC 292
           V KLE+G R +TPD  D  + ++++I  C
Sbjct: 73  VEKLESGTRELTPD--DFTEDVHEIIEQC 99


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 378 VNKLETGYRLVTPDVLDKEKQLYDVIIDC 292
           V KLE+G R +TPD  D  + ++++I  C
Sbjct: 73  VEKLESGTRELTPD--DFTEDVHEIIEQC 99


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 288 GVGKVMEISFNYLRHGGKYVL 226
           G   V+++SFN  RH G +++
Sbjct: 229 GEFSVLQVSFNLQRHTGYFLI 249


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 168 KELTIIGVKINPFSFPNALGWLKAMGNRYVNY-EKLGVKTYALS 40
           KE  II    N + + N   +     N Y NY +KL  K Y ++
Sbjct: 310 KEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 565 RWPMRAILLRGARLRSRFPST 503
           R   + IL +GAR R   PST
Sbjct: 333 REAFKRILTKGARARGNQPST 353


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 108 WLKAMGNRYVNYEKLGVKTY 49
           W KA G++   YE+L  + Y
Sbjct: 743 WKKATGSKSGEYEELRERAY 762


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 108 WLKAMGNRYVNYEKLGVKTY 49
           W KA G++   YE+L  + Y
Sbjct: 739 WKKATGSKSGEYEELRERAY 758


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,826
Number of Sequences: 438
Number of extensions: 3932
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)