Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14l06
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 206 2e-54
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 88 1e-18
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 69 8e-13
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 44 2e-05
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 38 0.001
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 30 0.36
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.48
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 5.9
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 206 bits (504), Expect = 2e-54
Identities = 92/187 (49%), Positives = 133/187 (71%)
Frame = -3
Query: 615 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 436
GT+I A + GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 435 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 256
Y+L+ ++++ G P V TAA + E+CY ++ L AG++VAG+D+K G +YSIP+GG
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 255 VQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGVI 76
+ +Q DANF+ NMT+EEA +F+ + + LA+ RDGSSGG +R+ ++
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVIL 203
Query: 75 TEAGVER 55
+ G+ER
Sbjct: 204 NKDGMER 210
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 88.2 bits (209), Expect = 1e-18
Identities = 49/184 (26%), Positives = 92/184 (50%)
Frame = -3
Query: 621 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 442
STGT+I+ +V+GAD+R T G IA++ KL I+ I+C +G+AADT+ +
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92
Query: 441 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 262
+++ ++ H + P V TA + ++ + Y+ + A +++ G+D KG +++I
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151
Query: 261 GMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLG 82
G + ++ ++P++ + EA + V + + I D SG L
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLV 211
Query: 81 VITE 70
VI E
Sbjct: 212 VIDE 215
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 68.5 bits (160), Expect = 8e-13
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 1/185 (0%)
Frame = -3
Query: 615 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 436
GT+ +A + G+V+ DSR + G IA++ K+ +I + +G AAD Q ++
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 435 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 259
H++ + V A+ I + Y+Y+ L G ++AG K G +Y I G
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAG-TGKGGTALYYIDSDG 179
Query: 258 MVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGVVRLGV 79
+ +D+ ++ +++K+EA ++ A RD SGG V L
Sbjct: 180 TRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYH 239
Query: 78 ITEAG 64
I E G
Sbjct: 240 IDENG 244
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 44.4 bits (100), Expect = 2e-05
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 18/208 (8%)
Frame = -3
Query: 615 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 436
G + +A DG ++ D+R+ G I R ++ ++ D + SG AD A+ +
Sbjct: 13 GGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRI 72
Query: 435 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 259
++ + ++ A + R L Y R VAG DK+ +IYS G
Sbjct: 73 QQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVG 132
Query: 258 MVQRQAXXXXXXXXXXXXXXVDANF---------------KPN--MTKEEAKKFVTDTLT 130
+R+ +D KP + EEA K TD T
Sbjct: 133 SYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAFT 192
Query: 129 LAILRDGSSGGVVRLGVITEAGVERSVI 46
A R G V + +IT+ GVE +I
Sbjct: 193 SAGERHIEVGDSVLVKIITKEGVETRII 220
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 627 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 448
P TG+S++A +F GV+I AD+ + G+ ++LTK+ D G +D Q I
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.9 bits (64), Expect = 0.36
Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 6/186 (3%)
Frame = -3
Query: 615 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 436
GT+ +A + +VIG + + + K+ + + + +G AD + + D
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 435 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDS-----LMAGILVAGWDKKKGA-QIYS 274
HK+ L DP +E + Y S L+AG+D ++Y
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQ 148
Query: 273 IPIGGMVQRQAXXXXXXXXXXXXXXVDANFKPNMTKEEAKKFVTDTLTLAILRDGSSGGV 94
G+ ++ N+K ++++E +L L +++ S G
Sbjct: 149 TEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSL-LEVVQTAS--GN 205
Query: 93 VRLGVI 76
+ L ++
Sbjct: 206 IELAIM 211
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 588 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 478
+ G+V+G DSR +Y+ +T+ T TDQI R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 396 PPLVETAAAIFRELC 352
PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,659
Number of Sequences: 5004
Number of extensions: 50524
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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