Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14l02
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   0.93 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   4.9  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 0.93
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 120 LIKNTSIDSKYTYLNFSVSXSEXVIEYYMYKNGVLAYDLI 1
           L    S  +  +++ FS+  S   +   M +NGVL + L+
Sbjct: 286 LFNENSEAAARSFVPFSIERSSQSVAEVMDRNGVLFFGLL 325



 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 64  PFRNXDRILH 35
           P RN DRIL+
Sbjct: 255 PIRNNDRILY 264


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 91  FTVN*CVFNQAXYFLCXIXFYEP 159
           +TVN  +      FLC + FY P
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLP 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,081
Number of Sequences: 438
Number of extensions: 488
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)