Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14k09
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 144 9e-36
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 132 4e-32
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 115 6e-27
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 97 2e-21
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 94 2e-20
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 73 3e-14
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 42 7e-05
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.30
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.39
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.52
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.52
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.69
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 2.8
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.8
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.8
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 4.8
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 4.8
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 4.8
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 144 bits (350), Expect = 9e-36
Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 5/220 (2%)
Frame = -1
Query: 734 IQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTM 555
I GG+++ P+GYLK ++ ++ G L + DE QTG GRTG F FE HG+ PDI+T+
Sbjct: 220 ILSTGGIIELPQGYLKALKKKCEERGMLLIIDEAQTGIGRTGSMF-SFEHHGIVPDILTL 278
Query: 554 AKGIGNGFPLAAVVTTKEI--AANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNS 381
+K +G G LAAV+T++EI ++ T +P+ + +G VL+V++ + L + +
Sbjct: 279 SKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKA 338
Query: 380 KVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVEL---VEPGTKTPLTTSKVNDIHENIK 210
K+ GE L+ L+ +HP+I DVRG GL+ G+E+ +P + + + D +
Sbjct: 339 KISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPSDFLGTVIGDKCLELG 398
Query: 209 DNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 90
N ++ G VFRI PP+ +T +++ I I + A+
Sbjct: 399 MNCNIVHLRG-IGGVFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 132 bits (320), Expect = 4e-32
Identities = 80/216 (37%), Positives = 127/216 (58%), Gaps = 1/216 (0%)
Frame = -1
Query: 734 IQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTM 555
IQG GV+ GYL++A +L K + L++ADEVQTG RTG E VKPD+V +
Sbjct: 215 IQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLC-IEHSNVKPDVVIL 273
Query: 554 AKGIGNG-FPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSK 378
K I G +P++AV++++EI N + +T+GGNP+ + V A LEV++EE L + +
Sbjct: 274 GKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNPLGAAVSIAALEVVKEEKLTERAA 333
Query: 377 VVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGV 198
V+GE F L++ + P++ VRG+GL+ V + E +KT T+ D+ ++ GV
Sbjct: 334 VLGEKFRTALIECKS--PIVQKVRGRGLLNAVVIDE--SKTNGRTAW--DLCLIMRSRGV 387
Query: 197 LIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 90
L N+ R PP+ IT++D+ GI +I ++
Sbjct: 388 LAK--PTHGNIIRFSPPLVITEEDLMKGIEVIKKSL 421
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 115 bits (277), Expect = 6e-27
Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Frame = -1
Query: 734 IQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTM 555
IQG GGV+ P GYL KA+EL K V DE+QTG GRTG FW E + PD +
Sbjct: 245 IQGEGGVIVPPPGYLAKARELCTKYDTYLVLDEIQTGCGRTG-KFWACEYENIIPDCIAF 303
Query: 554 AKGIGNG-FPLAAVVTTKEI---AANHAKAAYFN--TFGGNPMASTVGKAVLEVIEEEGL 393
AKG G P A + T+E+ A N + A+ + T+ N + G A ++ I + L
Sbjct: 304 AKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLGLAAGVATIDYIVQNDL 363
Query: 392 QQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVEL--VEPGTKTPLTTSKVNDIH 222
+ +G +L LQ + P V+ DVRG+G+++G+E + + I
Sbjct: 364 LSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIPESVQEEFGEYYATPIV 423
Query: 221 ENIKDN-GVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIKK 84
++ D V + +VFR PP+ I + D+D G+S + A+ K
Sbjct: 424 NDLADTYHVQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVESAVAK 470
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 97.1 bits (231), Expect = 2e-21
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 3/219 (1%)
Frame = -1
Query: 734 IQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFET--HGVKPDIV 561
+QG GG+ +L ++ K G + DE+Q G GR+GD W PDI+
Sbjct: 232 VQGEGGICPAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD-LWAHSIVKDVASPDII 290
Query: 560 TMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNS 381
T+AK + NG P+ A + + +IAA + +TFGGNP+A VG + + + QN
Sbjct: 291 TVAKPLANGLPIGATIVSSKIAAEIHPGEHGSTFGGNPVACRVGTFCVNELGSSKILQNV 350
Query: 380 KVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDN 204
+ + + D ++P +I G+GL++G++ EP K E +
Sbjct: 351 RKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQFTEPPAK----------FIELARQQ 400
Query: 203 GVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIK 87
G+L+ GG NN R+ P + + + + G+ I+ +K
Sbjct: 401 GLLLLPGG--NNNTRVLPSLNVKDEVIAKGLDIMESTLK 437
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 94.3 bits (224), Expect = 2e-20
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 14/221 (6%)
Frame = -1
Query: 698 GYLKKAQELIKKNGGLYVADEVQTGFGRTGD-HFWGFETHGVKPDIVTMAKGIGNGF-PL 525
GY K +++ K G ++ DEV +G GRTG H W E GV PDI ++AK +G G+ P+
Sbjct: 237 GYFKAMRKVCDKYGVIFYLDEVMSGIGRTGTMHAW--EQEGVTPDIQSIAKCLGGGYQPI 294
Query: 524 AAVVTTKEIA----ANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFI 357
+ + I A A F T+ +P+A + AV ++ + L + + +G+Y
Sbjct: 295 SGALVGHRIMNVFEQKDAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLS 354
Query: 356 RQLMDLQKQHPVIGDVRGQGLMIGVELV-EPGTKTPLTTS-KVNDIHENIK-DNGVLIAR 186
+L + HP +G++RG+GL G+E+V + TK KV + I ++GV +
Sbjct: 355 EKLHETFDSHPNVGNIRGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEHGVFVYP 414
Query: 185 G-----GRFNNVFRIKPPMCITKQDVDFGISIINDAIKKVV 78
G G + + PP IT++ +D + ++ I V
Sbjct: 415 GMGTIDGTRGDHVLLAPPYIITREQIDELVEALSKTITSTV 455
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 73.3 bits (172), Expect = 3e-14
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = -1
Query: 734 IQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVK--PDIV 561
IQ GG + K Q +KK+ ++ DEVQTG G TG W E + PD+V
Sbjct: 271 IQSEGGDNHASPDFFHKLQATLKKHDVKFIVDEVQTGVGSTGT-LWAHEQWNLPYPPDMV 329
Query: 560 TMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNS 381
T +K AA + ++A +FNT+ G+P + + +L+ I+++ L N
Sbjct: 330 TFSKKFQ-----AAGIFYHDLALRPHAYQHFNTWMGDPFRAVQSRYILQEIQDKDLLNNV 384
Query: 380 KVVGEYFIRQLMDLQKQHP-VIGDVRGQG 297
K VG++ L +L ++HP I ++RG+G
Sbjct: 385 KSVGDFLYAGLEELARKHPGKINNLRGKG 413
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = -1
Query: 734 IQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHGVKPDIVTM 555
+QGAGG + K +++ Q +KN +++ DEV T G + + +KPD+ T+
Sbjct: 212 MQGAGGAIPADKEFMQTIQLECEKNDIVFILDEVMTSRLSPGGL---QQIYCLKPDLTTL 268
Query: 554 AKGIGNGFPLAA 519
K +G G P A
Sbjct: 269 GKYLGGGLPFGA 280
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 142 HIGGFILNT--LLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTS 315
H G F++N L P T ++ T EV++GV+ S +P+ PLT
Sbjct: 105 HYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTI 164
Query: 316 PITGC 330
GC
Sbjct: 165 VCDGC 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.39
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 139 MHIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRP-CPLTS 315
MHI +LN LK PP ++S S I S S T V + PG + S P+ P P++
Sbjct: 195 MHIINLLLNGSLKSPPVSISP--SFIASAAS-TSSVSAPSQYPGLSRSPPVQAPNIPVSD 251
Query: 316 P 318
P
Sbjct: 252 P 252
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.52
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +3
Query: 84 FFDRIIDDRNAEVDV-----LFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 248
F DR++D+ NAEV + + W Y+ I+ + + +D L++ GS
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 249 QRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQLPDEVFADYLTV 386
+R L S +D++ + + N +++ + ++ + +Y TV
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTV 804
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.52
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +3
Query: 192 DEHSVVFDIL-MDIIN------FGSGQR--CLSSGFNKLHSDHEALSPDIANHWVLLLK- 341
DEHS+ D++ +DI + FG G C G N L S N+ ++LL
Sbjct: 347 DEHSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVLLDH 406
Query: 342 --IHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIG 494
+P E+ DY + L FN F + VS E+ + + + G
Sbjct: 407 GLYRDIPHELQVDYANMWLNIINFNEKNLKFYAKKVANVSDENFPIFATAITG 459
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.1 bits (62), Expect = 0.69
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 180 STTSDEHSVVFD---ILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLL 338
S S+E SV+FD +L I++ S +S F +HS HE PDIA + +L
Sbjct: 776 SPDSEEGSVLFDDGELLCGILDKSSFG---ASAFGLVHSVHELYGPDIAGRLLSVL 828
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 235 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 56
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 55 LARLKVFIFV 26
+ + V
Sbjct: 288 AISFSICVIV 297
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -1
Query: 536 GFPLAAV-VTTKEIAA---NHAKAAYFNTFGGNPMASTVGKAVLEVIEEE 399
GFP+ V T+ I + N A+ A + G P+ S++GKA+LE+ EE
Sbjct: 436 GFPVGFVNAVTRHIPSPRENAARKASQSYIG--PINSSIGKAILEMSREE 483
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 235 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 56
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 55 LARLKVFIFV 26
+ + V
Sbjct: 288 AISFSICVIV 297
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 180 STTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQL 353
S T+ +HS + + N G++ +SS + SD PD H L+ K +QL
Sbjct: 121 SVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQL 178
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 120 VDVLFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDII 233
V +LF D W F++ + +ST++ E + D + ++
Sbjct: 195 VGILFEDDLWYFFNTLYMLSSTSAIEFAYFLDSIFTVV 232
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 253 GVLVPGSTSSTPIM-----RPCPLTSPITGCCF*RSINCLMKYSPTTLLFCCSPSSSI 411
G+L+ GST ++ I+ +P L +TG R I C+ + T + + C SSI
Sbjct: 145 GLLLSGSTDASLIVWDVSSQPSRLLYKLTGHS--RGIECITRQPNTDIFWTCGSESSI 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,708
Number of Sequences: 5004
Number of extensions: 63438
Number of successful extensions: 229
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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