Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14k07
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   2.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   6.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    24   6.4  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   6.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    24   8.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   8.5  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   8.5  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    24   8.5  

>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 172 TDSGGKIYMGTERSSLRTCKGTSWGDQGRP 261
           +DS G+I     R+     KG ++GD  RP
Sbjct: 240 SDSTGEIRKKISRAQTDNIKGITYGDSNRP 269


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 330 LKRLSQIIKCFQSFLDLLTPS 268
           +  LSQ  KCF+  ++LL PS
Sbjct: 80  IAELSQRQKCFEYLMELLCPS 100


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +1

Query: 115 FCRRVVRKLRWRQPSNAKATDSGGKIYMGTERSSLRTC-KGTSWGDQGRPTS 267
           FC   +RKL W   S+ K+      I M           +G  WG  G+P S
Sbjct: 306 FCNNFIRKLSW--SSSTKSNYVSLLIAMVVRELVFAILPRGCIWGFNGKPLS 355


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  VVFGSFFPSDFSPLAYIFR 94
           + FGS FPS   PLA + R
Sbjct: 302 IKFGSHFPSKTVPLALVIR 320


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 163 RYWAAAIVISSPLFYKIHKMSNSP-EN--VSKWAEIRRKE 53
           ++W     +SS L +  ++ SNSP EN  V K +EI  K+
Sbjct: 19  QHWRKRSAVSSSLEFSSYEESNSPIENTEVLKVSEIEAKK 58


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 346  DFIEKTEKVISNY*VFSIFS*F 281
            DF E+T +V+S   +F IFS F
Sbjct: 1439 DFTEETWEVVSRKFIFPIFSIF 1460


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 81  ASGLKSEGKKLPNTTKCSSSNHS 13
           ++G+KS+G  LP+T   S S+ S
Sbjct: 740 SAGMKSDGSLLPSTKHTSLSSSS 762


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 155 GCRHRNFLTTLLQNSQNVKL 96
           G RHR     L+ N  N+KL
Sbjct: 160 GTRHRALANLLINNDSNIKL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,764
Number of Sequences: 5004
Number of extensions: 30991
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)