Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14k04
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    30   0.35 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.61 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.81 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   1.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.9  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.5  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   3.3  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   7.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   10.0 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   10.0 
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   10.0 
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   10.0 

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 657 KEQALYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 529
           K   + + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 133 KHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 363 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 253
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 460 VHKLNRVFGEDKSELNWETIPDDVL 534
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -3

Query: 651 QALYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 541
           Q L+ +++++ +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 30  QDLFSKREAQ-LTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 545 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 444
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 378 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 262
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 515 VSQLSSDLSSPKTRLSLCTSATV 447
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 120 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 25
           +T+ P G    +GY   +   P HY + I  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 287  TWYWESALTGTATIWPSESTASIVS 213
            T Y+ +   G ATI PS  TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 322 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 456
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 445  ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 555
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 459 KRDGLALTLSNDVQGDDGRPAYGD 388
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 169  LVLHLQP*IQQGFDTVEDG 113
            +V HL   I+Q +D +EDG
Sbjct: 1020 IVFHLMQRIKQSYDVIEDG 1038


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,649
Number of Sequences: 5004
Number of extensions: 48358
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)