Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14k02
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    29   2.7  
11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964...    28   6.3  
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    28   6.3  
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680...    28   8.3  

>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/77 (33%), Positives = 37/77 (48%)
 Frame = +2

Query: 299 GRQLRRPCPCLSKNNLKNYNNGRELPQTVRHLSKRLCT*TRKALDP*LAKRIVSSENQSQ 478
           G+  RR C   +K++LK  N+      T    S R        LD   AKR + SENQS+
Sbjct: 343 GKMSRRQC---TKHDLKKKNSNVAFHSTYGRNSDRKWHGNH--LDGHRAKRNMPSENQSK 397

Query: 479 QFCL*NEENSESKSLRD 529
           + C  N ++ +S S  D
Sbjct: 398 ESCYPNMKDWQSYSHGD 414


>11_06_0489 -
           24196037-24196105,24196199-24196279,24196358-24196438,
           24196513-24196614,24196693-24196782,24196865-24196945,
           24197021-24197122,24197198-24197287,24197368-24197448,
           24197524-24197622,24197720-24198055,24198142-24198228,
           24198318-24198413,24198499-24198732,24198792-24199036,
           24199119-24199383
          Length = 712

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +1

Query: 364 SRASSNCSTFEQTFVHINKKSIRSVTGEAHRII*KSIATVLPLERRKFGVQESP*LITVK 543
           +RA  NCST    + HI  K   S+     R     + ++LP ++ K G Q    L    
Sbjct: 644 TRAKENCSTKALPYDHITAKQ-SSIKSSVKRTRTNCVDSILPPDKAKQGPQRKGVLENTS 702

Query: 544 SPRV 555
           S  V
Sbjct: 703 SKSV 706


>05_03_0104 -
           8426374-8426542,8426656-8426828,8427020-8427103,
           8427110-8427205,8427530-8427616,8428639-8428767,
           8428922-8429098,8429185-8429295,8429642-8429761,
           8430767-8432427,8432485-8432867,8433707-8434470,
           8434532-8434813,8436158-8436493
          Length = 1523

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 659 QAILIEHEDP--SSVYYKKYNELLGQDVYGCLIEMTTTRGDFTVINHGDSWTPNFLRSKG 486
           Q +L+ H+D   +++  K    L+    +G L   T       VIN  +S TPN L  + 
Sbjct: 701 QRVLV-HKDGQLANITLKNVRSLIASQCFGSLCLHTPVLRVLDVINCAESETPNVLEDRD 759

Query: 485 RTV 477
           +T+
Sbjct: 760 KTM 762


>09_06_0205 -
           21567467-21567655,21567791-21567876,21567965-21568037,
           21568267-21568326,21568887-21568935,21569328-21569431,
           21569587-21569640,21569719-21569763,21569817-21569879,
           21570415-21570615,21570620-21570797,21570900-21570993,
           21571075-21572478,21572560-21572604,21572710-21572788,
           21573424-21573589,21573679-21573771,21573872-21573929,
           21574063-21574120,21574210-21574367,21575130-21575177,
           21575269-21575320,21575404-21575529
          Length = 1160

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -3

Query: 632 PSSVYYKKYNELLGQDVYGCLIEMTTTRGDFTVINHGDSWTPNFLRSKGRTVAIDFQ 462
           PSS      + +LG++V  CL E+ T+   F +  H    T  F     +TV   F+
Sbjct: 207 PSSSPLPLVSNILGKNVSSCLHEIATSDKHFALSGHISRPTDVFCNKDWQTVMYFFE 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,236
Number of Sequences: 37544
Number of extensions: 312645
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)