Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14k02
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81142-10|CAB03503.2| 384|Caenorhabditis elegans Hypothetical p... 54 1e-07
Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z92827-1|CAB07326.1| 394|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AF067943-8|AAO12414.1| 428|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z74038-6|CAA98496.1| 423|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical p... 36 0.028
Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical p... 36 0.028
Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical p... 36 0.028
AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical ... 32 0.46
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 31 0.80
AC006769-8|AAF60581.1| 431|Caenorhabditis elegans Hypothetical ... 30 1.4
AC006645-1|AAF39843.1| 418|Caenorhabditis elegans Hypothetical ... 30 1.4
Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical pr... 29 2.4
U49830-15|AAK31473.2| 166|Caenorhabditis elegans Hypothetical p... 29 2.4
U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical p... 29 3.2
AC024749-2|AAF60435.2| 444|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 27 9.9
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 27 9.9
>Z81142-10|CAB03503.2| 384|Caenorhabditis elegans Hypothetical
protein ZK1037.4 protein.
Length = 384
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = -3
Query: 539 TVINHGDSWTPNFLRSKGRTVA--IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEAL 366
+VI HGD W P L K +A +D+Q SP+ DL L CT+V + + L
Sbjct: 240 SVICHGDLWAPQILWDKEDNIAGIVDWQATHRGSPMEDLHHILSTCTSVQNRKTFTKPLL 299
Query: 365 DHYYNFLDYFLKDMG 321
DHYYN L LK+ G
Sbjct: 300 DHYYNKLKVGLKEKG 314
>Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical
protein C29F7.2 protein.
Length = 394
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = -3
Query: 539 TVINHGDSWTPNFLRSKGRTVA--IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEAL 366
+V+ HGD W P L K +A ID+Q+ SP+ D + CT+V + + L
Sbjct: 250 SVLTHGDLWAPQILWDKNDDIAGIIDWQITHRGSPMEDFHHIMSTCTSVENRKNLTKPLL 309
Query: 365 DHYYNFLDYFLKDMGMDVAIVFPRDAFENELK 270
D+Y++ L L+ G V + + R+ E E K
Sbjct: 310 DYYFDKLSSGLEAKG--VKMPWTREEIEEEYK 339
>Z92827-1|CAB07326.1| 394|Caenorhabditis elegans Hypothetical
protein C29F7.1 protein.
Length = 394
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Frame = -3
Query: 539 TVINHGDSWTPNFLRSKGRTVA--IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEAL 366
+V+ HGD W+P L K +A ID+Q+ SP+ DL L T+V + + + L
Sbjct: 250 SVLTHGDLWSPQILWDKDDNIAGIIDWQVGHQGSPMEDLHRILSTGTSVENRNKLTKPLL 309
Query: 365 DHYYNFLDYFLKDMGMDVAIVFPRDAFENELKIYGKFGFLTCLTSIPLLANE--GTSALQ 192
DHY+ L L++ G V + + R+ + E +G SI + +N +S +
Sbjct: 310 DHYFEKLSAGLEEKG--VKMPWTREEVDEEYNHCFSYG-----ASITIFSNGIWSSSPIL 362
Query: 191 LTEDFPEHSRI 159
T+ P+ +RI
Sbjct: 363 QTDGKPDPARI 373
>AF067943-8|AAO12414.1| 428|Caenorhabditis elegans Hypothetical
protein F59B1.10 protein.
Length = 428
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = -3
Query: 536 VINHGDSWTPNFLRSKGR-----TVAIDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEE 372
V+ HGD W NFL ++ T +D+QM +P DL+ L +++
Sbjct: 277 VLCHGDLWAANFLWTENNGVFCATRIVDYQMSHLGNPAEDLVRLLVSTITGADRQAHWQQ 336
Query: 371 ALDHYYNFLDYFLKDMGMDVAIVFPRDAFENELKIYGKFGFLTCL 237
L+ +Y+ YFL ++G A + + + K+Y G L L
Sbjct: 337 ILEQFYS---YFLNELGSGEA-PYTLEQLKLSFKLYFPVGALALL 377
>Z74038-6|CAA98496.1| 423|Caenorhabditis elegans Hypothetical
protein F58B4.5 protein.
Length = 423
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -3
Query: 536 VINHGDSWTPNFLRSK-GRTVA----IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEE 372
V+ H D W+ NFL ++ G V IDFQ + +P D+ C + E+ +
Sbjct: 271 VLTHSDLWSSNFLCTRDGEKVTLKAIIDFQTVSITTPAQDVGRLFASCLSTKDRREKADF 330
Query: 371 ALDHYYNFLDYFLKDM-GMDVAIVF 300
L+ YYN F+ ++ GMDV F
Sbjct: 331 LLEEYYN---TFVNELDGMDVPYTF 352
>Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical
protein F49C12.7c protein.
Length = 414
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 536 VINHGDSWTPNFL-RSKGRTVA-IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALD 363
V HGD W+ N + +G IDFQMI TDL + C + E+ L
Sbjct: 268 VFVHGDLWSANIMWNQEGHLKKLIDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLK 327
Query: 362 HYYNFLDYFLKD 327
HY++ L K+
Sbjct: 328 HYFDCLTKHCKE 339
>Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical
protein F49C12.7b protein.
Length = 448
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 536 VINHGDSWTPNFL-RSKGRTVA-IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALD 363
V HGD W+ N + +G IDFQMI TDL + C + E+ L
Sbjct: 298 VFVHGDLWSANIMWNQEGHLKKLIDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLK 357
Query: 362 HYYNFLDYFLKD 327
HY++ L K+
Sbjct: 358 HYFDCLTKHCKE 369
>Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical
protein F49C12.7a protein.
Length = 444
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 536 VINHGDSWTPNFL-RSKGRTVA-IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALD 363
V HGD W+ N + +G IDFQMI TDL + C + E+ L
Sbjct: 298 VFVHGDLWSANIMWNQEGHLKKLIDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLK 357
Query: 362 HYYNFLDYFLKD 327
HY++ L K+
Sbjct: 358 HYFDCLTKHCKE 369
>AL021346-2|CAB63233.1| 419|Caenorhabditis elegans Hypothetical
protein H37A05.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.46
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Frame = -3
Query: 548 GDFTVINHGDSWTPNFLRSKGRT------VAIDFQMIRCASPVTDLMLFLFMCTNVCSNV 387
G V+ H D W N L S IDFQ +SP D+ C +
Sbjct: 266 GHSPVLMHSDIWPSNLLFSLSSENKLEFKALIDFQTASLSSPGLDVGCLTVTCLSKKDRR 325
Query: 386 EQFEEALDHYYNFLDYFLKDMGMDVAIVFPRDAFENELKI 267
E LD YY F+K + +I + R+ E+ ++
Sbjct: 326 TVQSEILDRYYK---SFVKSLKTPNSIPYTREQLEDSYEL 362
>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 31.1 bits (67), Expect = 0.80
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = -3
Query: 410 CTNVCSNVEQFEEALDHYY--NFLDYFLKDMGMDVAIVFPRDAFENE---LKI-YGKFGF 249
CT ++ F+E +DH + + Y + + A+++ + FE E LK+ K
Sbjct: 279 CTACSVTIKSFQEVMDHILLTDHVKYLVNFGFSEKALLWWKKRFETEQEQLKVQVPKVDE 338
Query: 248 LTCLTSIPLLANEGTSALQLTEDFPEHSRIPLEKLWDISPIKN--EQYQMRFVNALRLAV 75
+SIP + TS L P R+PL +SP+ + Q F++ LR ++
Sbjct: 339 KPTESSIPTKTSNVTSQLNKPSPSPHTQRVPL-----LSPLASATRSSQKMFIDTLR-SI 392
Query: 74 DANL 63
D L
Sbjct: 393 DVKL 396
>AC006769-8|AAF60581.1| 431|Caenorhabditis elegans Hypothetical
protein Y45G12C.4 protein.
Length = 431
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Frame = -3
Query: 536 VINHGDSWTPNFLR---SKGRTV---AIDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFE 375
V+NHGD W N L G V ID+Q + P DL L C E+
Sbjct: 280 VLNHGDLWQSNMLHCLDEHGNLVLKAIIDWQGVSMLPPGLDLARLLMGCLTAYERRERGA 339
Query: 374 EALDHYY 354
E L Y+
Sbjct: 340 ELLMLYH 346
>AC006645-1|AAF39843.1| 418|Caenorhabditis elegans Hypothetical
protein F56A4.5 protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Frame = -3
Query: 536 VINHGDSWTPNFLR---SKGRTV---AIDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFE 375
V+NHGD W N L G V ID+Q + P DL L C E+
Sbjct: 267 VLNHGDLWQSNMLHCLDEHGNLVLKAIIDWQGVSMLPPGLDLARLLMGCLTAYERRERGA 326
Query: 374 EALDHYY 354
E L Y+
Sbjct: 327 ELLMLYH 333
>Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical
protein T07G12.3 protein.
Length = 638
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 273 EFVFESVSWEDNCDVHAHVFQKII 344
EF+ E+V WEDN +V+ H+ +II
Sbjct: 141 EFL-ETVCWEDNIEVYGHIHTQII 163
>U49830-15|AAK31473.2| 166|Caenorhabditis elegans Hypothetical
protein C33F10.1 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 476 AIDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEA 369
AI + +R A + +LFLF+ T V +VE FEE+
Sbjct: 92 AIHVKSMRIAGFIAQSILFLFVYTIVTMDVENFEES 127
>U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical
protein E02C12.10 protein.
Length = 665
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Frame = -3
Query: 536 VINHGDSWTPNFLRSKGR------TVAIDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFE 375
V+NHGD W N L ID+Q + P DL L C + E+
Sbjct: 266 VLNHGDLWQSNMLHCLDEFGNLKLKAIIDWQGVSTLPPGLDLSRLLMGCLSAHERRERGL 325
Query: 374 EALDHYYNFLDYFL 333
E L Y+ + L
Sbjct: 326 EMLKLYHETFNQVL 339
>AC024749-2|AAF60435.2| 444|Caenorhabditis elegans Hypothetical
protein Y16E11A.1 protein.
Length = 444
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = -2
Query: 276 TQNIRKVRISYMPDVNSALSKRGDQCVTIDRRFSRT*SNTIRKTMGHFTYQKRAVSDEIC 97
+ + ++ RIS S + D + RF+ IRK G+F + R DE C
Sbjct: 215 SNSCKEFRISETVKNISRFIDKEDYFTDTEERFNIPWRMGIRKRNGYFEFYLRCEKDE-C 273
Query: 96 ERFKTSCRCESYLNCTSLN 40
E K S E L S N
Sbjct: 274 ENRKWSIETELTLKLISCN 292
>Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical
protein F58G11.3a protein.
Length = 666
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 701 DWYSKFQHKAVMIDQA-ILIEHEDPSSVYYKKYNELLGQDVYGCLIEMTTTRGD 543
D+ SK+ H A + D A ILIEH D Y K+ + +D L+++ + + D
Sbjct: 48 DYCSKY-HLAGVYDMAQILIEHPDVRQTYEGKFKIIANEDNQD-LVDLISKQSD 99
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 404 NVC-SNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFPRDA 288
++C + +E EE L N YF+ D GM +++V P DA
Sbjct: 172 SICFARLENEEECLGGR-NDTKYFITDSGMQISLVNPSDA 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,376
Number of Sequences: 27780
Number of extensions: 308767
Number of successful extensions: 904
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -