Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14k01
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   0.49 
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   4.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   4.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   4.6  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   4.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   4.6  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    23   8.0  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    23   8.0  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 192 WLLARSKFLIPNILF*YNYSSKCSLKFF 275
           W+LAR KF   N    YNYS+K  +  F
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKF 435


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 207 FALTTKSLRMSPNKGT 160
           F+L++KSLR+S  KGT
Sbjct: 74  FSLSSKSLRLSNRKGT 89


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 158 HVPLLGDILKDLVVSAK*ISNSKH 229
           HVP+  DI    +V  K  +N KH
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKH 405


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 81  PTTIRPARKIISPLETLFLGGVQITLMFLCWATFLKI 191
           P TI   RK+ S L+   +   ++ L F CW   L +
Sbjct: 73  PFTIL-CRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 137  WRSADNAHVPLLGDILKDLVVS 202
            WRSAD+ H+P +   L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 65  WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 169
           WDG  A    +   D+   GN+ + R+ +N  H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 182 ECRPT-KEHERYLHSAKKQGFQR 117
           +CR     H RYL SAKK G  R
Sbjct: 20  QCRNKYHSHVRYLSSAKKSGILR 42


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 176 RPTKEHERYLHSAKKQGFQR*DDLPRRPDG 87
           RPT+  ER+  +   +GF   D+  R  DG
Sbjct: 243 RPTRRRERHYRTRDDEGF---DEFGRSRDG 269


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 26  LVAVMLDIDQHPGW 67
           L++++ D D HP W
Sbjct: 135 LLSIIFDFDSHPDW 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,396
Number of Sequences: 5004
Number of extensions: 20312
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)