Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14j24
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    24   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 588 ILMICLXKLAAVSRCYRAETSNLAEERGIYRVH 490
           +++ CL  L+ V   ++    NL E+  +Y+V+
Sbjct: 4   VIVFCLMALSIVDAAWKPLPENLKEDLIVYQVY 36


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 588 ILMICLXKLAAVSRCYRAETSNLAEERGIYRVH 490
           +++ CL  L+ V   ++    NL E+  +Y+V+
Sbjct: 4   VIVFCLMALSIVDAAWKPLPENLKEDLIVYQVY 36


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 285 GEISSCSNCTDYQSRRLNITYKTLNDEYCFVHTL 184
           G  S  S CT  ++R +++ Y   N+E     TL
Sbjct: 63  GNFSWGSECTTRKTRIIDVVYNASNNELVRTKTL 96


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 58  HYELFSIHKFLNCFRYYYFSFGM 126
           H E+  I  F NC +   + FGM
Sbjct: 210 HMEVIKIKNFDNCDQRINYHFGM 232


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 400 YFFLCVPYHFKHFF 441
           YFF+C   HF   F
Sbjct: 454 YFFICPSIHFAQLF 467


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 400 YFFLCVPYHFKHFF 441
           YFF+C   HF   F
Sbjct: 454 YFFICPSIHFAQLF 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,050
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)