Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14j22
(679 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002910-1|AAH02910.2| 367|Homo sapiens FOXRED1 protein protein. 135 1e-31
AF103801-1|AAF02421.1| 486|Homo sapiens unknown protein. 135 1e-31
BC013902-1|AAH13902.1| 486|Homo sapiens FAD-dependent oxidoredu... 135 2e-31
CR457155-1|CAG33436.1| 390|Homo sapiens PIPOX protein. 35 0.23
BC150251-1|AAI50252.1| 878|Homo sapiens pyruvate dehydrogenase ... 35 0.23
BC027622-1|AAH27622.1| 390|Homo sapiens pipecolic acid oxidase ... 35 0.23
BC022388-1|AAH22388.1| 613|Homo sapiens DMGDH protein protein. 35 0.23
BC008960-1|AAH08960.1| 390|Homo sapiens pipecolic acid oxidase ... 35 0.23
AF136970-1|AAG49431.1| 432|Homo sapiens sarcosine oxidase protein. 35 0.23
AF134593-1|AAF37331.1| 390|Homo sapiens L-pipecolic acid oxidas... 35 0.23
AF111858-1|AAF21941.1| 866|Homo sapiens dimethylglycine dehydro... 35 0.23
AB082521-1|BAC02699.1| 883|Homo sapiens KIAA1990 protein protein. 35 0.23
BC035372-1|AAH35372.1| 788|Homo sapiens chromosome 17 open read... 32 1.6
BC032219-1|AAH32219.2| 560|Homo sapiens C17orf28 protein protein. 32 1.6
AK075111-1|BAC11407.1| 340|Homo sapiens protein ( Homo sapiens ... 32 1.6
BC142988-1|AAI42989.1| 645|Homo sapiens splicing factor 4 protein. 30 8.7
BC063784-1|AAH63784.1| 643|Homo sapiens SF4 protein protein. 30 8.7
AY280362-1|AAP35084.1| 2386|Homo sapiens EGF domain-containing p... 30 8.7
AY072917-1|AAL68961.1| 641|Homo sapiens RNA-binding protein spl... 30 8.7
AL713757-1|CAD28528.1| 392|Homo sapiens hypothetical protein pr... 30 8.7
AL137286-1|CAB70678.1| 392|Homo sapiens hypothetical protein pr... 30 8.7
AF521128-1|AAN77123.1| 645|Homo sapiens splicing factor 4 protein. 30 8.7
AC004475-1|AAC08052.1| 608|Homo sapiens F23858_1 protein. 30 8.7
AB011541-1|BAA32469.2| 2785|Homo sapiens MEGF8 protein. 30 8.7
>BC002910-1|AAH02910.2| 367|Homo sapiens FOXRED1 protein protein.
Length = 367
Score = 135 bits (327), Expect = 1e-31
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Frame = -1
Query: 667 ERIMRVRYMTEENEEYG-IKFAGCILTAGSDSSEIAKFAKVGTGD-GMLM-VPLPVEKRK 497
+RI V + + EY ++ A I AG+ S++IA A VG G G L LPVE RK
Sbjct: 145 KRIHEVHVKMDRSLEYQPVECAIVINAAGAWSAQIAALAGVGEGPPGTLQGTKLPVEPRK 204
Query: 496 HEVYSLEGNNTEIGLNTPMIMDTTGLWLQRKGLGKDFLGGYLPSLDQND---NLVDTEQY 326
VY GL TP++ DT+G + +R+GLG ++LGG P+ + NL +
Sbjct: 205 RYVYVWHCPQGP-GLETPLVADTSGAYFRREGLGSNYLGGRSPTEQEEPDPANLEVDHDF 263
Query: 325 LKTTFLSSLMHRIPSCNNAQVQSHSSLYYDCTTYDNSGILGPHPYHNNLYIAAGFGQLGC 146
+ L R+P+ +VQS + YYD T+D +G++GPHP N+Y A GF G
Sbjct: 264 FQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNGVVGPHPLVVNMYFATGFSGHGL 323
Query: 145 QHAPGLGRALTELIIDSQFNTIDLTRLGFDRLLTDQPMMECN 20
Q APG+GRA+ E+++ +F TIDL+ F R + + E N
Sbjct: 324 QQAPGIGRAVAEMVLKGRFQTIDLSPFLFTRFYLGEKIQENN 365
>AF103801-1|AAF02421.1| 486|Homo sapiens unknown protein.
Length = 486
Score = 135 bits (327), Expect = 1e-31
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Frame = -1
Query: 667 ERIMRVRYMTEENEEYG-IKFAGCILTAGSDSSEIAKFAKVGTGD-GMLM-VPLPVEKRK 497
+RI V + + EY ++ A I AG+ S++IA A VG G G L LPVE RK
Sbjct: 264 KRIHEVHVKMDRSLEYQPVECAIVINAAGAWSAQIAALAGVGEGPPGTLQGTKLPVEPRK 323
Query: 496 HEVYSLEGNNTEIGLNTPMIMDTTGLWLQRKGLGKDFLGGYLPSLDQND---NLVDTEQY 326
VY GL TP++ DT+G + +R+GLG ++LGG P+ + NL +
Sbjct: 324 RYVYVWHCPQGP-GLETPLVADTSGAYFRREGLGSNYLGGRSPTEQEEPDPANLEVDHDF 382
Query: 325 LKTTFLSSLMHRIPSCNNAQVQSHSSLYYDCTTYDNSGILGPHPYHNNLYIAAGFGQLGC 146
+ L R+P+ +VQS + YYD T+D +G++GPHP N+Y A GF G
Sbjct: 383 FQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNGVVGPHPLVVNMYFATGFSGHGL 442
Query: 145 QHAPGLGRALTELIIDSQFNTIDLTRLGFDRLLTDQPMMECN 20
Q APG+GRA+ E+++ +F TIDL+ F R + + E N
Sbjct: 443 QQAPGIGRAVAEMVLKGRFQTIDLSPFLFTRFYLGEKIQENN 484
>BC013902-1|AAH13902.1| 486|Homo sapiens FAD-dependent
oxidoreductase domain containing 1 protein.
Length = 486
Score = 135 bits (326), Expect = 2e-31
Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 6/222 (2%)
Frame = -1
Query: 667 ERIMRVRYMTEENEEYG-IKFAGCILTAGSDSSEIAKFAKVGTGD-GMLM-VPLPVEKRK 497
+RI V + + EY ++ A I AG+ S++IA A VG G G L LPVE RK
Sbjct: 264 KRIHEVHVKMDRSLEYQPVECAIVINAAGAWSAQIAALAGVGEGPPGTLQGTKLPVEPRK 323
Query: 496 HEVYSLEGNNTEIGLNTPMIMDTTGLWLQRKGLGKDFLGGYLPSLDQND---NLVDTEQY 326
VY GL TP++ DT+G + +R+GLG ++LGG P+ + NL +
Sbjct: 324 RYVYVWHCPQGP-GLETPLVPDTSGAYFRREGLGSNYLGGRSPTEQEEPDPANLEVDHDF 382
Query: 325 LKTTFLSSLMHRIPSCNNAQVQSHSSLYYDCTTYDNSGILGPHPYHNNLYIAAGFGQLGC 146
+ L R+P+ +VQS + YYD T+D +G++GPHP N+Y A GF G
Sbjct: 383 FQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNGVVGPHPLVVNMYFATGFSGHGL 442
Query: 145 QHAPGLGRALTELIIDSQFNTIDLTRLGFDRLLTDQPMMECN 20
Q APG+GRA+ E+++ +F TIDL+ F R + + E N
Sbjct: 443 QQAPGIGRAVAEMVLKGRFQTIDLSPFLFTRFYLGEKIQENN 484
>CR457155-1|CAG33436.1| 390|Homo sapiens PIPOX protein.
Length = 390
Score = 35.1 bits (77), Expect = 0.23
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -1
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTEL 107
T D IL HP ++N+ I AGF G + AP +G+ L EL
Sbjct: 324 TPDEQFILDRHPKYDNIVIGAGFSGHGFKLAPVVGKILYEL 364
>BC150251-1|AAI50252.1| 878|Homo sapiens pyruvate dehydrogenase
phosphatase regulatory subunit protein.
Length = 878
Score = 35.1 bits (77), Expect = 0.23
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Frame = -1
Query: 523 VPLPVEKRKHEVYSLEGNNTEIGLNTPMIMDTTGLWLQRKGLGKDFLGGY----LPSLDQ 356
V +P+ +H T + +TP I+D G R G GG+ P +
Sbjct: 255 VSIPLHACEHFYLLTRPLETPLQSSTPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTE 314
Query: 355 NDNLVDTEQYLK-----TTFLSSLMHRIPSCNNAQVQSHSSLYYDCTTYDNSGILGPHPY 191
N ++ + + LSSL+ R+P ++ + + T D I+G P
Sbjct: 315 GKNQLEIQNLQEDWDHFEPLLSSLLRRMPELETLEIMKLVNC-PETFTPDMRCIMGESPA 373
Query: 190 HNNLYIAAGFGQLGCQHAPGLGRALTELII 101
++ AG G G G+ L E ++
Sbjct: 374 VQGYFVLAGMNSAGLSFGGGAGKYLAEWMV 403
>BC027622-1|AAH27622.1| 390|Homo sapiens pipecolic acid oxidase
protein.
Length = 390
Score = 35.1 bits (77), Expect = 0.23
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -1
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTEL 107
T D IL HP ++N+ I AGF G + AP +G+ L EL
Sbjct: 324 TPDEQFILDRHPKYDNIVIGAGFSGHGFKLAPVVGKILYEL 364
>BC022388-1|AAH22388.1| 613|Homo sapiens DMGDH protein protein.
Length = 613
Score = 35.1 bits (77), Expect = 0.23
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = -1
Query: 211 ILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTELIIDSQ--FNTIDLTRLGFDRLLTDQ 38
++GPH N ++A GFG G HA G+G+ L++ I+ + F+ I+L + + T Q
Sbjct: 220 MVGPHQGVRNYWVAIGFG-YGIIHAGGVGKYLSDWILHGEPPFDLIELDPNRYGKWTTTQ 278
>BC008960-1|AAH08960.1| 390|Homo sapiens pipecolic acid oxidase
protein.
Length = 390
Score = 35.1 bits (77), Expect = 0.23
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -1
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTEL 107
T D IL HP ++N+ I AGF G + AP +G+ L EL
Sbjct: 324 TPDEQFILDRHPKYDNIVIGAGFSGHGFKLAPVVGKILYEL 364
>AF136970-1|AAG49431.1| 432|Homo sapiens sarcosine oxidase protein.
Length = 432
Score = 35.1 bits (77), Expect = 0.23
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -1
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTEL 107
T D IL HP ++N+ I AGF G + AP +G+ L EL
Sbjct: 324 TPDEQFILDRHPKYDNIVIGAGFSGHGFKLAPVVGKILYEL 364
>AF134593-1|AAF37331.1| 390|Homo sapiens L-pipecolic acid oxidase
protein.
Length = 390
Score = 35.1 bits (77), Expect = 0.23
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = -1
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTEL 107
T D IL HP ++N+ I AGF G + AP +G+ L EL
Sbjct: 324 TPDEQFILDRHPKYDNIVIGAGFSGHGFKLAPVVGKILYEL 364
>AF111858-1|AAF21941.1| 866|Homo sapiens dimethylglycine
dehydrogenase precursor protein.
Length = 866
Score = 35.1 bits (77), Expect = 0.23
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = -1
Query: 211 ILGPHPYHNNLYIAAGFGQLGCQHAPGLGRALTELIIDSQ--FNTIDLTRLGFDRLLTDQ 38
++GPH N ++A GFG G HA G+G+ L++ I+ + F+ I+L + + T Q
Sbjct: 381 MVGPHQGVRNYWVAIGFG-YGIIHAGGVGKYLSDWILHGEPPFDLIELDPNRYGKWTTTQ 439
>AB082521-1|BAC02699.1| 883|Homo sapiens KIAA1990 protein protein.
Length = 883
Score = 35.1 bits (77), Expect = 0.23
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Frame = -1
Query: 523 VPLPVEKRKHEVYSLEGNNTEIGLNTPMIMDTTGLWLQRKGLGKDFLGGY----LPSLDQ 356
V +P+ +H T + +TP I+D G R G GG+ P +
Sbjct: 260 VSIPLHACEHFYLLTRPLETPLQSSTPTIVDADGRIYIRNWQGGILSGGFEKNPKPIFTE 319
Query: 355 NDNLVDTEQYLK-----TTFLSSLMHRIPSCNNAQVQSHSSLYYDCTTYDNSGILGPHPY 191
N ++ + + LSSL+ R+P ++ + + T D I+G P
Sbjct: 320 GKNQLEIQNLQEDWDHFEPLLSSLLRRMPELETLEIMKLVNC-PETFTPDMRCIMGESPA 378
Query: 190 HNNLYIAAGFGQLGCQHAPGLGRALTELII 101
++ AG G G G+ L E ++
Sbjct: 379 VQGYFVLAGMNSAGLSFGGGAGKYLAEWMV 408
>BC035372-1|AAH35372.1| 788|Homo sapiens chromosome 17 open reading
frame 28 protein.
Length = 788
Score = 32.3 bits (70), Expect = 1.6
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 601 CILTAGSDSSEIAKFAKVGTGDGMLMVPLPVEKRKHEVYS 482
CI +D SEI +F + GT G+L VP P+ RK++ S
Sbjct: 712 CIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANS 751
>BC032219-1|AAH32219.2| 560|Homo sapiens C17orf28 protein protein.
Length = 560
Score = 32.3 bits (70), Expect = 1.6
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 601 CILTAGSDSSEIAKFAKVGTGDGMLMVPLPVEKRKHEVYS 482
CI +D SEI +F + GT G+L VP P+ RK++ S
Sbjct: 484 CIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANS 523
>AK075111-1|BAC11407.1| 340|Homo sapiens protein ( Homo sapiens
cDNA FLJ90630 fis, clone PLACE1003438. ).
Length = 340
Score = 32.3 bits (70), Expect = 1.6
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 601 CILTAGSDSSEIAKFAKVGTGDGMLMVPLPVEKRKHEVYS 482
CI +D SEI +F + GT G+L VP P+ RK++ S
Sbjct: 264 CIDKGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANS 303
>BC142988-1|AAI42989.1| 645|Homo sapiens splicing factor 4 protein.
Length = 645
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 467 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIG 526
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 527 DFLPP-DELEKFMETFKALK 545
>BC063784-1|AAH63784.1| 643|Homo sapiens SF4 protein protein.
Length = 643
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 465 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIG 524
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 525 DFLPP-DELEKFMETFKALK 543
>AY280362-1|AAP35084.1| 2386|Homo sapiens EGF domain-containing
protein protein.
Length = 2386
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 409 RKGLGKDFLGGYLPSLDQNDNLVDTEQYLKTTFLSSLMHRIPSCNNAQVQSHSSLYYDCT 230
R+GL +GGY P N L++ Q T++S P + HS++Y++ T
Sbjct: 1169 RRGLSLLLVGGYSPENGFNQQLLE-YQLATGTWVSGAQSGTPPTG---LYGHSAVYHEAT 1224
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAP 134
D+ + G +H + +AA +L H P
Sbjct: 1225 --DSLYVFGGFRFH--VELAAPSPELYSLHCP 1252
>AY072917-1|AAL68961.1| 641|Homo sapiens RNA-binding protein splice
variant a protein.
Length = 641
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 463 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIG 522
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 523 DFLPP-DELEKFMETFKALK 541
>AL713757-1|CAD28528.1| 392|Homo sapiens hypothetical protein
protein.
Length = 392
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 214 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIG 273
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 274 DFLPP-DELEKFMETFKALK 292
>AL137286-1|CAB70678.1| 392|Homo sapiens hypothetical protein
protein.
Length = 392
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 214 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIG 273
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 274 DFLPP-DELEKFMETFKALK 292
>AF521128-1|AAN77123.1| 645|Homo sapiens splicing factor 4 protein.
Length = 645
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 467 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWKHQLRRMEMDKTREWAEQLTKMGRGKHFIG 526
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 527 DFLPP-DELEKFMETFKALK 545
>AC004475-1|AAC08052.1| 608|Homo sapiens F23858_1 protein.
Length = 608
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -1
Query: 538 DGMLMVPLPVEKRKHEVYSLEGNNTEIGL----NTPMIMDTTGLW---LQRKGLGKDFLG 380
D L+ V++ +H S E ++E+G M MD T W L + G GK F+G
Sbjct: 430 DMQLLWEKAVQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIG 489
Query: 379 GYLPSLDQNDNLVDTEQYLK 320
+LP D+ + ++T + LK
Sbjct: 490 DFLPP-DELEKFMETFKALK 508
>AB011541-1|BAA32469.2| 2785|Homo sapiens MEGF8 protein.
Length = 2785
Score = 29.9 bits (64), Expect = 8.7
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 409 RKGLGKDFLGGYLPSLDQNDNLVDTEQYLKTTFLSSLMHRIPSCNNAQVQSHSSLYYDCT 230
R+GL +GGY P N L++ Q T++S P + HS++Y++ T
Sbjct: 1568 RRGLSLLLVGGYSPENGFNQQLLE-YQLATGTWVSGAQSGTPPTG---LYGHSAVYHEAT 1623
Query: 229 TYDNSGILGPHPYHNNLYIAAGFGQLGCQHAP 134
D+ + G +H + +AA +L H P
Sbjct: 1624 --DSLYVFGGFRFH--VELAAPSPELYSLHCP 1651
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,828,576
Number of Sequences: 237096
Number of extensions: 2041058
Number of successful extensions: 3642
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3639
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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