Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14j22
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.7  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   6.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 214 GILGPHPYHNNLYIAAGFGQLGCQHAPG 131
           GIL  HP  + L +  G+G    +H PG
Sbjct: 193 GILSQHPQQHGLGVQNGYG----RHLPG 216


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 513 LLRKENMKFILLKEIIQKLVLILP 442
           +L  + M F+L+ EII    L LP
Sbjct: 273 ILLSQTMFFLLISEIIPSTSLALP 296


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 172 QYTNYYDKDVVPIFLNCRMWCNHNTNC 252
           +YT  YD   + + LN     N   NC
Sbjct: 23  KYTTKYDNVDIDVVLNTERLLNAYVNC 49


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 172 QYTNYYDKDVVPIFLNCRMWCNHNTNC 252
           +YT  YD   + + LN     N   NC
Sbjct: 23  KYTTKYDNVDIDVVLNTERLLNAYVNC 49


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 376 YLPSLDQNDNLVDTEQYLK 320
           Y+ +L  NDN++++  Y+K
Sbjct: 173 YIGTLATNDNILESISYVK 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,244
Number of Sequences: 438
Number of extensions: 4423
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)