Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14j08
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   4.1  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   9.4  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 411 PSSFNFHCSSTILPSNKN*NVKSCLSIEQILDFISKPEY 295
           PSS  ++  S IL S     +K+   I +++ ++ KPE+
Sbjct: 447 PSSIEYNIISNILFSIPTIPLKNASPIVELISYVMKPEF 485


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 524 CYIFSSMFEYRILSGRCYRC 583
           CY+FSS F Y+  S R Y C
Sbjct: 152 CYLFSSYFSYK--SSRQYTC 169


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 255 LFSSSNIQNLN*PNFDKT*TITRRSFHLIIQISACSKAVNNY 130
           + SSSN+QNL   N D   T+  +    I+    C++ + NY
Sbjct: 491 IVSSSNLQNLTLENVDN--TVWDKRHWAILLPRLCTRGLLNY 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,702
Number of Sequences: 5004
Number of extensions: 40739
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)