Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14j04
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    29   0.50 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.2  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.7  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   3.5  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    27   3.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.7  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   6.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 341 FGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYAC-MMMFFLANMIEGQLISSGAF 165
           F    +++ I +G+ IF+WL         W     LYA   ++ F    + G ++S+   
Sbjct: 311 FSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVL 370

Query: 164 EISLNN 147
           +I+ ++
Sbjct: 371 DIAFHD 376


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -3

Query: 590 MLLVCTLLFTLTHINADSDE---GSISKIGTSVGHTMNIYYCYSCG 462
           +LL C +LF +T  +  S      SI  I T +G   ++YYC++ G
Sbjct: 515 ILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHG 560


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 386 YDPPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 219
           Y+  GF MYL  ++GFG  +V     + V  F  ++     WW+  +   L+  ++
Sbjct: 7   YEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 146 CC*EISQKLQRILAVLQSYLLKRTSSCMHTACFQGTNSTKQVVVCST 286
           CC E  +K +  L V+  +L    S C     FQ T    Q +V +T
Sbjct: 650 CCYEGDEKDEERLTVISEFLKSCFSGCQDRRSFQITMEDFQAIVDTT 696


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 65  TAGYYLLFETIQMVAGFFQSLFWTKV 142
           T+G+Y     I   A FFQSL W  +
Sbjct: 374 TSGWYRYARKIHYTADFFQSLSWALI 399


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 627 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 547
           ++ +  YV+PKR++      + TN YQ
Sbjct: 57  FETISDYVIPKRELCNKTITVCTNHYQ 83


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 92   FQIIDNTLQFSKMDLPKNLFVQS 24
            F++  N + F  MDLP+N F+Q+
Sbjct: 1003 FRLAMNVIFFFSMDLPRNAFMQT 1025


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 345 WFWQNVGHHVYTQRCEY 295
           W WQN+G   YT+ C++
Sbjct: 75  WNWQNLGISRYTKDCDF 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 368 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 261
           N Y+   +GF     ++ +LSG  I   LN P  AW
Sbjct: 46  NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,694
Number of Sequences: 5004
Number of extensions: 70304
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)