Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14i06
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.08c |||traub transciption factor family protein |Schizos... 90 2e-19
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.82
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 28 1.1
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 1.4
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 27 1.9
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 4.4
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 4.4
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.8
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 5.8
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 7.6
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 25 7.6
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 7.6
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 7.6
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 90.2 bits (214), Expect = 2e-19
Identities = 59/200 (29%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
Frame = -3
Query: 639 LDDYEKEISISHKAFKPFRDASIQKWNEKTRLA---TASNIKNAPTNTVLQQISYILSDR 469
L++ E++ + +++ ++ KW+ + + + SN A +++QQI + ++
Sbjct: 248 LEEIALEMNNLDDSLNEWKNDTLTKWHNRVQAVQGISQSNKFKALNQSIVQQIENSMINK 307
Query: 468 DKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLREL 289
L+ RT+ + YS D T N PEI++D DFY LL++
Sbjct: 308 KDLVERTR--------IDYS-------DPNNKTFN--------PEIYNDTDFYQSLLKDF 344
Query: 288 IECKSADISDPVQLSRQWIALQQMRSKMKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCL 109
I + AD + + +W+A ++ + K K VDTKA+KGRKI+Y VH++L N+MAP +
Sbjct: 345 INSRMADSTRDGTV--RWMATKKQKQK-KENVDTKASKGRKIRYHVHDKLQNFMAPIEVT 401
Query: 108 TWTEESTNELYNSLFGKMFE 49
W +E T +L++SL G+ +
Sbjct: 402 VWPDEQTEDLFSSLLGQQLD 421
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 2 FNIFPTSPPXSWYYYGSNIFPNKELYNSFVLSSV 103
F+ F ++PP +WY S+++ Y S++ +V
Sbjct: 658 FSGFESAPPAAWYLQFSHLYGYSATYYSYIFDTV 691
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/138 (21%), Positives = 61/138 (44%)
Frame = -3
Query: 648 KRKLDDYEKEISISHKAFKPFRDASIQKWNEKTRLATASNIKNAPTNTVLQQISYILSDR 469
++++ + EK + + +A K + ++ + L T N L + + +LS +
Sbjct: 108 RKRIQELEKSLGDAEEALKLSNEETVTLTAQVESL-TQDITDLRQQNASLVEENQLLSTQ 166
Query: 468 DKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLREL 289
K R R E+++ S AV + E++ + + ++Y EI HQL EL
Sbjct: 167 SKQWERRA--RDEHEMQE-SLAVRLADCEEQLARETERQEQYEVEIQRHLTNQHQLEIEL 223
Query: 288 IECKSADISDPVQLSRQW 235
K++ + +L+R W
Sbjct: 224 ESTKASHTENLGELTRNW 241
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 550 SFFIPFLNRCISEWFEGFMRY*NXXXXXXXXXXLWK 657
S FIP + R + +WF+ F RY LW+
Sbjct: 612 SSFIPTIMRQLLDWFKNFQRYSTQKLASSFERELWE 647
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 564 WNEKTRLATASNIKNAPTNTVLQQISYILS 475
W E T +A AS NA VL + SY+LS
Sbjct: 761 WKELTSVAEASKFANAVGYPVLVRPSYVLS 790
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = -3
Query: 411 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWI 232
S +N + +K+ K D +PEIF+ ++ + + L+ D L R
Sbjct: 142 SSESDNQPEKKKIKKQNPTDLVSVPEIFEQSN--PKPVVHLVVTGHVDSGKSTMLGRIMF 199
Query: 231 ALQQMRSKMKRKVDTKATKGRK 166
L ++ S+ +K+ +A K
Sbjct: 200 ELGEINSRSMQKLHNEAANSGK 221
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -3
Query: 546 LATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYD--IVGYSKAVNNDNDSEKV 373
LA+ ++ N ++ I+ D DKL+ + K+ +YD + K + S K
Sbjct: 117 LASEMDVINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDKSLKD 176
Query: 372 TKNRKDDDEYIPEIFDDNDFYHQLLRE 292
K + + + + ++Y+++L+E
Sbjct: 177 EKKLYEAETAFEQSSQEYEYYNEMLKE 203
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 507 TVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNND 391
TV + +S +L+D ++RR+ L V + KA +ND
Sbjct: 592 TVERHVSTLLADSSSIVRRSLLNALAPLCVFFGKAKSND 630
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 158 YLIFRPFVALVSTFLFILLLICC 226
Y + P++ALVS F+ + +CC
Sbjct: 239 YTLLYPWIALVSAFVAETMTLCC 261
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 14 PTSPPXSWYYYGSNIFPNKELYNSFVLSSVHVKHFSGA 127
PT PP S Y +N+ PN + ++F S+ F+ A
Sbjct: 508 PTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKA 545
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 669 APANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKTRLATASNIKNAPTNTVL 499
A LP+ R+ D Y ++ KA + + ++ TRLA A + + PT T +
Sbjct: 715 ANERLPRSRRDDPYWTDLLERLKAVQLSHQNNYREPIRATRLALAGALPSTPTATTI 771
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 432 EYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDND 316
+ D G A+NN+++S+ D D + FDD D
Sbjct: 448 DVDFTGKIGAINNEDESDNEEVAFADSDSDLGGQFDDED 486
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -3
Query: 411 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADIS 262
++A N + +++NRK DD+ P F + + +E I+ D++
Sbjct: 126 NRASNTVDLDAIISRNRKPDDDEFPSSFPSEEELQEPEQENIDSDDEDLA 175
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 549 RLATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIV---GYSK 406
R T+ + +A TN+++ + SD D+ Q+ T+ + + G+SK
Sbjct: 47 RAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSK 97
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -3
Query: 210 KMKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCLTWTEESTNELYNSL 67
++ R V+ + K ++ ++NQ++NY ++ TE +YN L
Sbjct: 190 QVMRDVELEIYKDSPLE-TLYNQIINYAETDEIRRLTESKLLHMYNKL 236
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = -3
Query: 411 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQ 250
S+A+N + ++N +D++ E DD+ + Q + + K+ + ++PV+
Sbjct: 703 SRAINTILPFSEASQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVE 756
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,123
Number of Sequences: 5004
Number of extensions: 53613
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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