Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14i05
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   8.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 329 VKETARQKRERKQEFAKMRKQIHTIVLP 246
           +KET  +K++ KQ  +    Q    +LP
Sbjct: 534 MKETEEEKKKTKQSLSPSENQSKMEILP 561


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 297 KTRIRENAKTNSYDCVTNCRCNI 229
           K +IR    T  Y+C   C C+I
Sbjct: 460 KHKIRVPPGTPIYECNKRCNCDI 482


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +1

Query: 10  GKTWEWFPGNKHXYKH 57
           G  W+W    K  Y H
Sbjct: 170 GSAWQWNEERKQYYLH 185


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = -2

Query: 251 LPTVVVIFLLICVYVYIKTR 192
           + T+V++   +C+  Y+  R
Sbjct: 1   MKTIVILLFTLCIVSYMMVR 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,763
Number of Sequences: 438
Number of extensions: 2173
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)