Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14i02
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 195 4e-51
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 28 1.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 1.4
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 27 2.4
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 4.2
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 4.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 5.6
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 5.6
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 7.4
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 7.4
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 195 bits (476), Expect = 4e-51
Identities = 91/151 (60%), Positives = 122/151 (80%)
Frame = -1
Query: 662 YKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQL 483
+KGIRPAINVGLSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDLDA T+
Sbjct: 386 FKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRAT 445
Query: 482 LNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQ 303
L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+ ++ FE +F ++++S
Sbjct: 446 LDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYLRSSGA 505
Query: 302 GLLSTIAKDGQITPESDASLKKIVTDFLATF 210
++ I K+G ++ ++ SLK ++ +FL++F
Sbjct: 506 EIMEAIRKEGVLSKTTEDSLKAVIKEFLSSF 536
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 647 PAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG- 471
P N+GL V T+ + G + E Y + FA+ +D+D +QL+ G
Sbjct: 337 PHTNIGLMSKLV-----TQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGD 391
Query: 470 -MRLTELLKQGQYVPMAIEEQVAI 402
++T+L + + E +A+
Sbjct: 392 TEKMTDLFSKSRLYRYFFETSIAV 415
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 374 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 219
DK+DP AF+K T ++ TS + KD T S L I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 13 IPWIVSTFNTAHMNAILLFVS*KYCRHY 96
+PWI+ F+T ++ + + KY HY
Sbjct: 244 LPWILGAFSTIFLDIYIFYQFIKYRNHY 271
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -1
Query: 377 LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 228
L++LDP KIT + E I + QG S++ K + P+ A VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 541 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 437
+R P L W PLH + + LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 291 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 425
G+ + S+ + +FLL DF G +L+ T +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 26 YQHSIQPI*MLYYYSSH 76
Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 387 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 521
D ++ G+ + + I+SLL+ELS S E S +Q+ +E+
Sbjct: 65 DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/89 (23%), Positives = 42/89 (47%)
Frame = +3
Query: 291 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTH 470
G K V ++L+ +L ++ +LV ++ + D N+ H++ LE LS +
Sbjct: 290 GHKGTVEEVELLNSYLRSKAEVA--KLVGKSSFADLQLIDKMANAPKHVVEFLENLSLKN 347
Query: 471 SSVEQLLCSGIQVRTELGKSCDLTVLSQF 557
SSV + + + + + + K +L L F
Sbjct: 348 SSVLKKILNNLALMKK--KELNLNFLPSF 374
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 381 SPRQAGPLQNHCLREGIHSTHQN*PPGSS 295
SPRQA P ++ L G++S + PP S+
Sbjct: 301 SPRQARPRRSVSLATGLNSPSVSKPPSSA 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,731
Number of Sequences: 5004
Number of extensions: 48995
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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