Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14i01
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    52   1e-07
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    29   0.81 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    27   3.3  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   4.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.7  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 42/73 (57%)
 Frame = -1

Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
           R H EEAMK ARRSVSD ++R+YE +A  L  SRG  T F+F +             + P
Sbjct: 753 RHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQFDS--------ADSNTNGP 803

Query: 493 TFQEEGGDDDLYS 455
           +F  +G  DDLY+
Sbjct: 804 SFGNDGA-DDLYA 815


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 239 KRKEKNTKPARESDCASQSHKIHVSNVNLIYS 144
           ++K+K+ KP  E+  +S  +K   SNVNL YS
Sbjct: 498 RKKQKSLKPDTENQESSVKNKKAKSNVNLQYS 529


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 534  ELQGARVLQRATSPRSRRRGVTTTCTAKLCLA 439
            +L+ A  LQ+   PR+RR+G T   +AK  LA
Sbjct: 1411 KLKAAERLQKPAIPRTRRKGHTEPKSAKSLLA 1442


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 670 AHFEEAMKFARRSVSDNDIRKYEMFAQ 590
           A FE A K  + SVSD D +KY+  A+
Sbjct: 742 ADFELAFKNIKPSVSDRDRQKYQRLAK 768


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 534 ELQGARVLQRATSPRSRRRGVTTTCTAKLCLARDL 430
           ELQ   V   + SPR R  GVT   TA++   R +
Sbjct: 60  ELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKI 94


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 429 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 331
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,387
Number of Sequences: 5004
Number of extensions: 46293
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)